Rattus norvegicus (rat): 308435 Help Entry 308435            CDS       T01003                                  Symbol Cic Name (RefSeq) protein capicua homolog 2   KO K20225   capicua transcriptional repressor Organism rno  Rattus norvegicus (rat) Pathway rno05017   Spinocerebellar ataxia Brite KEGG Orthology (KO) [BR:rno00001]  09160 Human Diseases   09164 Neurodegenerative disease    05017 Spinocerebellar ataxia     308435 (Cic)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:rno03000]     308435 (Cic) Transcription factors [BR:rno03000]  Eukaryotic type   beta-Scaffold factors with minor groove contacts    HMG SOX     308435 (Cic) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HMG_box HMG_box_2 Motif Other DBs NCBI-GeneID:  308435 NCBI-ProteinID:  NP_001100960 RGD:  1310706 Ensembl:  ENSRNOG00000056118 LinkDB All DBs Position 1:89980660..90008357 Genome browser AA seq 1605 aa AA seqDB search MYSAHRPLIPASGAASRGLGMFVWTNVEPRSVAVFPWHSLVPFLAPSQPDPSVQPSEAQQ PASHPVASNQSKEPAESAAVAHEQPPGGTGGADPGRPPGATCPESPGPGPPLTLGGVDPG KSLPPTTEEEAPGPPGEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRRTQSLSALPKE RDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYA LGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPASLGLAGGHKETRERSM SETGTAAAPGVSSELLSAAAQTLLSSDTKAPGSGPCGAERLHAVGGPGSARPRAFSHSGV HSLDGGEVDSQALQELTQMVSGPTSFSGPKPSPQYGAPGSFAAPGEGGNLATSGRPPLLP SRASRSQRAASEDMTSDEERMVICEEEGDDDVIADDSFGTTDIDLKCKERVTDSESGDSS GEDPEGNKGFGRKVFSPVIRSSFTHCRPTLDPEPPGPPDPPAAFSKGYGPTPSSSSSPAS TSVSVSTSFSLGSGTFKTQESGQGSTAVPLRPPPPGAGGPTTPSKATRFLPTDSATFRRK RPESVGSLEAPGSSVIAAPPSGGGNILQTLVLPPSKEDREGTRVPSAPAPSLAYGAPAAP LCRPAATMVTNVVRPVSSTPVPIASKPFPTSGRAEASSNDTVGARTEMGTGSRVPGGSPL GVSLVYSDKKSAAATSPAPHLVAGPLLGTVGKAPATVTNLLVGTPGYGAPASPAVQFIAQ GAPGSATPAGSGASAGSGPNGPVPLGILQPGALGKAGGITQVQYILPTLPQQLQVAPAPA PAPGTKAAAPSGPAPTTSIRFTLPPGTSTNGKVLAATAPTAGIPILQSVPSAPPPKAQSV SPVQATPSGGSAQLLPGKVLVPLAAPSMSVRGGGAGQPLPLVSSPFSVPVQNGAQQPSKI IQLTPVPVSTPSGLVPPLSPATMPGPTSQPQKVLLPSSTRITYVQSAGGHTLPLGTSSAC SQTGTVTSYGPASSVALGFTSLGPSGPAFVQPLLSGQAPLLAPGQVGVSPVPSPQLPPAC TAPGGPVITAFYPGSPAPTSAPLGPPSQAPPSLVYTVATSTTPPAAAILPKGPPASATAT PAPTSPFPSATGSMTYSLVAPKAQRPSPKAPQKVKAAIASIPVGSFESGTTGRTGPTPRQ SLDSGVAREPAAPESELEGQPTPPAPPPPTETWPPTARSSPPPPLPAEERPGTKGPETAS KFPSSSSDWRVPGLGLESRGEPPTPPSPAPAPATGPSGSSSGSSEGSSGRAAGDTPERKE VTSSGKKMKVRPPPLKKTFDSVDNRVLSEVDFEERFAELPEFRPEEVLPSPTLQSLATSP RAILGSYRKKRKNSTDLDSAPEDPTSPKRKMRRRSSCSSEPNTPKSAKCEGDIFTFDRTG TETEDVLGELEYEKVPYSSLRRTLDQRRALVMQLFQDHGFFPSAQATAAFQARYADIFPS KVCLQLKIREVRQKIMQAATPTEQPPGAEASLPGPPPTGMAATPVPTPSPAGGPDPTSPG SDSGTAQVAPPLPPPPEPGPGQPGWEGAPQPSPPPSGPSTAATGR NT seq 4818 nt NT seq  +upstreamnt  +downstreamnt atgtactcggcccacaggcccctgatacccgcgtctggcgcggcctcccgtggcctcggc atgttcgtgtggacaaatgtcgaacctcgttctgtggctgtgttcccctggcactcctta gtccccttcctggcacccagccagcctgacccctctgtgcagcctagtgaggcccagcaa cctgccagccaccctgtggcctccaaccagagcaaagaacctgctgagtcagctgctgtt gctcatgagcagccaccaggagggacagggggtgctgaccctgggcgaccccctggagca acatgccctgagagcccagggcctggacctccactcactttgggtggtgtggatcctggt aaaagtctccctcccaccactgaggaggaggctcctggccctccgggagagccccggctg gacagtgagacagagagtgaccatgatgatgccttcctctcgatcatgtctcctgagatc cagctgcctctgccacctggaaagcgccgcacccagtctctgagtgccttgcccaaggaa cgagactcatcttctgagaaggatggacgaagccctaacaagcgggagaaggaccatatt cgtcggcccatgaatgccttcatgatcttcagcaagcggcaccgggccttggtccaccag cggcaccccaaccaggacaaccggactgtcagcaagatcctgggagagtggtggtatgct ctggggcccaaggagaagcagaaataccacgatctggccttccaggtgaaagaggcccac ttcaaggcccacccagattggaagtggtgcaacaaggaccgaaagaagtccagctcagag gccaagcctgcgagcctgggtctggcaggagggcacaaggagacgcgggaacggagcatg tcggagacgggaactgctgctgcccctggggtgtcttctgagctcctgtccgctgctgcc cagacgctcttgagctcggacaccaaggctccagggagtggcccctgtggagcagaacgg ctacatgcagttgggggacctggctcagcccgacccagagccttctcccacagtggggta cacagtcttgatggtggggaagtagacagccaagcactgcaagaactgacccagatggtt tctggccccacctcattctccggcccaaagccatccccccagtatggcgctccaggatct tttgcagctcctggtgaaggaggtaacttggccactagtgggcggcctccactgttgccc tctcgagcctctcgttcccagcgtgcagctagtgaagacatgaccagtgatgaggagcgg atggtcatctgtgaggaagaaggggatgacgacgtcattgctgatgacagctttggtacc actgacattgatctcaagtgtaaggaacgggtgaccgacagcgagagtggagacagctct ggggaggacccagagggcaacaagggctttggccgtaaggtgttttcacctgtcatccgc tcctcctttacccattgccgtccaaccctggaccctgagcctccagggcccccggatcca cctgcagccttcagcaaaggctatggtcccaccccatcatcctcctcttcacctgcttcc acctcagtctcagtctccacctccttttcactgggctctggaacctttaaaacgcaggag tctggtcagggcagcacagcggtgccactacggcccccacctcctggagctgggggccca acaacaccttccaaggccactcggtttcttcctacggattctgccacctttcggcgcaag agacctgaaagtgttggtagcctggaggcaccaggctcttcagtcattgcagcacctccc agtgggggaggaaacattctgcagacactggttctgcctccgagtaaggaggatcgagag ggtacacgagtgccctcagccccagccccatcactggcctatggggctccagcagcccct ttgtgccgccctgctgctaccatggtcaccaatgtggtacggcctgtcagcagcactcca gtgcccattgcctctaagccctttcccacctctggccgggctgaggcatcttcaaatgac acagtaggtgccaggactgaaatgggcactggatctcgggtgcctgggggctccccattg ggtgtcagtttagtgtattcagataagaagtcagcagcagccacctcaccagctccacat ttggtagctggacccctattgggcactgtggggaaggcacctgctactgtcaccaaccta ctggtgggcaccccaggctatggggctcctgcatcgcctgctgttcagtttattgcccag ggagccccaggcagtgcaacccctgcaggctcaggagcaagtgctgggagtggccccaat gggcctgtacctctgggcattctgcagccaggtgccctaggcaaggctgggggaatcaca caggtgcagtacatcctgcccacactgccccaacagcttcaagtggcacctgccccagca ccagcccctgggaccaaggcagcagctcccagtggccctgcacccaccaccagcatccgt ttcactctccctccgggcacctcgaccaacggcaaggtcctggctgccactgcgcccact gctggcatccctatcctgcagtccgtaccctcagccccaccccctaaagcccagtcagtt tctcctgtccaggccacaccttcaggtggctcagcccagctgctgcctgggaaggtgcta gtccccctggctgcccctagcatgtcagttcgaggtggaggggctggtcagccactgccc ctggttagctcgcctttctcagtacctgtccaaaatggtgcccaacaacctagcaagatt atccagctgactcctgttcctgtgagcacacctagtggcctggtaccacccctgagccca gccacaatgccaggacccacatcacagcctcagaaggtcctgttgccttcttccacaaga atcacctatgtacagtcagcaggtgggcatactctgcctctaggcaccagttctgcatgc agtcagactggaacagtgacctcatatgggcccgccagctctgtagctctgggcttcaca tcgttggggcccagtggtcctgcctttgttcagccactgctctcaggccaagctccattg ctggctcctggccaggtgggcgtgtcacctgtgcctagcccccagttgcctcctgcctgt acagcccctggaggtcctgtcataacagcattttaccctggtagccctgcacccacttca gcacccctgggcccaccttcccaagctccgccaagcctggtctacactgtagccaccagc accaccccacctgctgctgccattcttcctaagggcccaccagcctctgccactgccact ccagcccctaccagtcctttccctagtgccacaggctccatgacctacagcttagtggct cccaaggcccagcgacccagcccaaaagccccccagaaagtaaaggcagccatcgccagc attcctgtggggtcttttgaatcgggtaccactgggcggactggacctacaccccgacag tctttggattctggtgtagcccgagagccagctgccccagaatcagagcttgaggggcag cccacacccccagcccccccacccccaacagagacctggcctcccactgcccggagcagc cccccaccccccctgcctgctgaggaacgacctggcactaaaggccccgagactgccagc aaattccccagttcatcttcagactggcgggttcctgggctgggcctggagagtcgtggg gagcctcccactcctcccagcccagctccagctccagccacaggccctagtggaagcagc agtggcagcagtgagggcagtagtgggagggcagctggggacacacctgagcgcaaggaa gtgactagttccggcaagaagatgaaggtgcggcccccgcccctgaagaagacctttgac tctgtggacaacagggtcctgtcagaagtggactttgaagagcggtttgctgagctgccc gagtttagaccagaggaggtgctgccctcacccaccctacagtctctggccacctctcct cgggctatccttggctcctaccgaaagaagaggaagaattccacggacctggactcggcg cctgaggatcccacttcacccaagcgtaagatgaggagacgttcgagctgcagctcagag cccaacaccccaaagagtgccaagtgcgagggggacatcttcaccttcgaccgcacaggt actgaaacggaggatgtgcttggggagctggagtatgagaaggtgccctactcatcactg cggcgcaccctggaccaacggcgggccctggtcatgcagctcttccaggaccatggcttc ttcccctcggcccaggccacagcagccttccaggcccgctacgcagacatctttccatcc aaggtgtgtctgcaattaaagatccgagaagtccgccagaagatcatgcaggcagccact cccacagagcagccccctggggctgaagcctccctccctggaccaccccctactggcatg gctgctactcctgtccccactcccagccctgctgggggccctgaccccacctctccaggc tcggactctggcactgcccaagttgccccgccactgcctccaccccccgagcctgggcct ggacagcctggctgggagggggctccccaaccttctccccctccctctggcccttccaca gctgccacaggcaggtga

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