Rattus norvegicus (rat): 309243
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Entry
309243 CDS
T01003
Symbol
Vps13a
Name
(RefSeq) intermembrane lipid transfer protein VPS13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
309243 (Vps13a)
Membrane trafficking [BR:
rno04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
309243 (Vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_mid_rpt
VPS13_ext_chorein
VPS13_DH-like
VPS13_VAB
Chorein_N
VPS13_C
ATG2-VPS13_C
Motif
Other DBs
NCBI-GeneID:
309243
NCBI-ProteinID:
NP_001094445
RGD:
1311340
Ensembl:
ENSRNOG00000025539
UniProt:
A0A8I6A4A2
LinkDB
All DBs
Position
1:complement(223328784..223555500)
Genome browser
AA seq
3167 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDQSQLSLGIWKGAVVLKNLVIKENALHELDVPFKVKVG
RIGSLQLKIPWKNLYTQPVEAVLEEIYLLIVPSSRIQYDPIKEEKQLMEAKQQELKRIEE
AKQKVVDQENPREEKQDTFAEKLVTQIIKNLQVQISSIHVRYEDDITNREKPLSFGISLQ
NLSLQTTDQYWIPCLHDDTEKLVRKLIRLDNLFAYWNVNSEMFYLNDYDDALEALKNGIV
NENIIPEGYDFVFRPISANAKLQMNRRSDFDFSDPKINLDIELHTIVIEFNKPQYFSLME
LLESIDMMTQNLPYRKFKPSVPLHLHAEEWWAYAIHGILEVNVCPSLRMWSWEHIKNHRY
KMKQYREFYKKKLTNKKPSPEILMSLEELEKTLDVFNITIARQQAEVEVKKAGYKIYKEG
LKDPEDNAGWFSWMWSWSESNANQQQDVKPGILAEMLTPEEKALLYEAIGYSETAVDPTL
PKTFEALKFFVHLKSMSIVLRENRQKPELLNVVVEGLSTSIVQRPGAQALKFETKIDSFH
ITGLPDDFKKPHLLSSLDDMSLFRITFEINPLDETVSQRCTIEAEPLEMIYDARTVNSIV
EFFRPPKDVRLAQLTTATLTKLEEFREKTATGLLYIIETQKVLDLRINVKASYVIVPQYG
NFSPTSNLLLLDLGHLKVTSKRRSGLPDVKPSGASLEDIMHRAYDSFDIQLSSIQLLYSR
VGDNWKEARKLNVSTQHILIPMHVNIELSKAMVFMDIKMPKFKIFGKLPLVSLRISDKKL
QGIMELLESIPKPEPVTDVSAPARSFQIQASTMPVSHISQKLIPLLEQSATEDDSEEEFF
DAPCSPLEEYPQVSCRVESTRRKKLQKKDGSMNFIQLSMRFEVAEVLIQFYHLVGDCELP
VLEMGVLGLGTEVEIRKFDLKGNAFLKELWLKCPGYLDEHKKPVYLITTLDNTMEDLLTL
EFMRVEKNAPNLNSTYNNVLQLIKVNFSSLDIHLHTEALLNTMNYLNNILPELGETSASV
SAAEPEDKGDIIKKLALKLPTNEDIITLQLLAELSCLRIFIQDQKQNISEIKIEGLDSEM
IMKPLVTEINAKLRNIIVLDSDKMAVYKKAVYITGKEVFSFKMISYMDATAGYAYTDMSV
VDARVYLTVGCIEVVFVTKFLYSILAFINNFQAVKNALAEATVQAAGMAADGVKELARKS
SRFALDVNIKAPVVLIPQSPVSRNVFVADFGLITIKNIFVTVTETQSNIPPVIDLITIKL
SKMRLYRSQFMNNTYQEVLDLLLPLNLEVIVERNLSWEWYKEVPCFNIKAQLKPMEFILS
QEDLTTVFQTLYGNIWYGRDVPAPSSVNKGPEIMTTEVTSTSYHSGATMVTSAVVEVHPQ
ASPANTTLNVSFQTDHLIMTLYSPGPDQASFTDVRDPSLELAEFKLENIISDLKVYTDDS
MVFSFSLKNCILDDKRPHVMKATPRMIGLTVGFDKKDMVDVKYRQIRDVFVTDVVVQEMY
VCASVEFLMTVARVFFDAYMTSTALETSVQTWTTREAPVQELRKWEMNILIKNPEIVFVA
DMTRNDAPALVITTQCEICCKGEPESNTVTAAIKDFQVRACPFLPVKRKGRVTTVLQPCD
LFYQATQFGTDPQTIDISVKSLTLKVSPVIINTIITVTSALYTTKETVPEESTSNVAHLW
DKKDTKNLKMWFLEESNETEKVVPTDEVMPGGETLNLNIDSIFIVLEAGIGHRTVPMLLA
KSSFLGESKNWRTLINLHCQLELEVHYFNEMFGVWEPLLEPLEIDQSDDFRPWNLGIKMK
KKAKEAIVESDSEEENYKVPEYKTAISFFSRDQLNITLSKCGLVMLSNLVEAFTEAATGS
SAVFLRDLAPFMILNSLGLTVSVSPSDSFHVLNVPLAKSYELKNEESLSMDYVRTKDNDH
FNAMTSLSSKLFFILLTPANHSVADKIPLTKVGRRLYTVRHRESGVERSIICQIDTVEGS
KKVTIRSPVQIKNHFSIPISVFEGDTLLGIASPENEFNIPLASYRSSLSLKPEDEDYQLC
EGIDFEEIIKHDGQLLKKKCRSISPSKKSFVINIVPEKDNLASLSAYSEDGWDLPYVMHL
WPPILIRNLLPYKIAYYLEGIENTVCTLSEGHSSQIYNVEMDQAKLHLKLLDYLNHDWKS
EFQIDPNQQDINFINFTCLTEMEKSDLDIAIHMTYNTGQTVVAFHSPYWMVNKTNRMLQY
KADGIHRKHPPNYKKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAIKCKG
LKMEYQVGVTIDLSSFNITRIVTFIPFYMIKNKSRYHISVTEEGSDKWLSLDLEQCIPFW
PENASDILLIQVERSEGPPKRIYFNKQDSCILLRLDNELGGVIAEVNLAEHSTVITFSDY
HEGAATFLLINHTKSDPVQYNQSSLSEIEDSLPPGKAVYYTWADPVGSRKLKWSCGQSYG
EVTHKDDMMTPISVGKKTIYLVSFFEGLQRIILFTEDPRVFKVTYESEKAELAELEVVLA
LQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKSRWKPMSVKHTEKLEKEFREYTES
SPLEDKVVELDNSIPVLLTPSGNDMKILEPHVIAVRRNYLPALKVEYNTSAHQSSFRIQI
YRIQIQNQIHGAIFPFVFYPIKPPRSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKVL
IQEMDLRLDLGFVYALADLVPKTEVTEKTEVEYFHRDVEAFEQEFEVVSSVDQSQVNLFE
YFHISPIKLHLSVSLSSGRDEAKDTEQHGGLIPVHSLNLLLKSIGATLTDVQDVVFKLAF
FQLNYQFHTTSELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYEP
YQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRRE
AMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVA
RPTGGIIDMASSTFQGIKRATETSEVESLRPPRFFNEDGVIRPYRLRDGTGNQMLQVMEN
GRFAKYKYFTHVMVNKTDMFMITRCGVLFVTKGTFGQLTCEWQYTFDEFTKEPFIVHGRR
LRIEAKERVKSVFHAKEFGKIINFKTPEDARWILTKLEEAREPSPRL
NT seq
9504 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcggtggtcgtggacgtgttgaaccggttcctcggagactatgtggtg
aacctggaccagtcccagctctctctgggcatttggaaaggagctgtggtcctcaagaat
cttgtaattaaagaaaatgcattgcatgaattggatgtaccattcaaagttaaagttggt
cgtataggtagccttcaacttaaaattccatggaaaaacctttatactcaaccagttgaa
gctgttttggaagaaatttatttactcatagtgccgtcttctagaatacagtatgatcct
atcaaagaagaaaagcaactcatggaagcaaaacaacaggaactaaaaagaatagaagaa
gcaaaacagaaagtagttgatcaagaaaatcctcgggaggaaaaacaagacacttttgca
gaaaagttagttactcaaatcataaagaatcttcaagtgcagatttccagtatccatgtc
cgttatgaagatgacatcacaaatcgagagaaacccctctcttttggcatttctcttcaa
aatctcagccttcagacaactgatcaatattggattccatgtttacatgatgatactgaa
aaactagttcggaagctaatccgattagataatctctttgcttactggaatgtgaattct
gagatgttttatctgaatgattatgacgacgcattggaagctttgaaaaatggtattgtc
aatgaaaatattattccagaaggttatgattttgtttttcgacctatatctgctaatgcc
aaacttcagatgaatcgacgatcagattttgacttttctgaccccaaaataaatctggat
attgagttacataccatagtaattgagtttaataaaccacagtattttagtctcatggaa
cttctcgagtcaattgacatgatgacacaaaacttgccgtacagaaagttcaagcccagc
gtgcctctccacctccatgccgaagagtggtgggcttatgctatacatggtattcttgaa
gtaaatgtttgtcccagtttacggatgtggtcatgggaacatattaaaaaccatagatac
aaaatgaaacaatacagagaattttataagaaaaagttaacaaataagaagccatctcct
gaaattctcatgtctttggaggagttggagaaaaccttggatgtttttaatataaccata
gctagacaacaggcagaagttgaggtaaagaaagctggatacaagatttacaaagaagga
ttaaaagatccagaagataatgcaggatggtttagctggatgtggtcttggtcagagtca
aatgctaatcaacaacaagatgttaaacctggaattcttgcagaaatgttgacacctgaa
gaaaaagcattactttatgaagcaattggttatagtgaaacagcagttgatccaaccttg
ccaaaaacatttgaagccttgaagttttttgttcacttgaaaagtatgtctattgttcta
agagaaaatcgccaaaagccggagctgttaaatgttgtagtggaaggacttagtacttcg
attgtgcaaagaccaggagcacaagccctaaaatttgaaaccaaaattgattcatttcat
attactggcttgccagatgattttaaaaaaccccacctactgtcttcattggatgatatg
tcactcttccggattacatttgagataaatcctttagatgaaacagtttctcagaggtgc
accatagaggctgagcctttagagatgatatatgatgcaaggacagtcaatagtatagtg
gagttcttcagacctccgaaagatgtccgtctagcccaactcactacagcaactttgaca
aaacttgaagaatttcgagagaaaacagcaacaggtttgctgtatattattgaaacacag
aaagttcttgatctcagaattaatgtaaaggcttcatatgtcattgtcccacaatatgga
aattttagccctacatcaaatctacttctcttggatcttggtcatttaaaggtgacaagt
aaacgtcgatcaggattaccagatgtgaaacctagtggggccagccttgaagatataatg
catagggcatatgactcttttgatattcagctttcaagcatacagttgctttacagcaga
gtgggtgacaattggaaagaagcacgaaagctcaatgtatccacgcagcatattttgata
cctatgcacgtcaatatagaactctctaaagccatggtgttcatggatatcaagatgccc
aaattcaagatttttgggaagttacctcttgtttcattgcgaatctcggataaaaaactg
caaggcattatggaattgttggaaagcattccaaaacctgaacctgtaactgatgtatct
gcccctgccaggtcattccagattcaagcatctactatgccagtgtcacacatttctcag
aagttaatccctttattggagcagtctgctactgaagatgactcagaggaggaatttttt
gatgcaccatgtagtcccttggaagagtatcctcaagtgtcatgtagagttgaatctact
cgacggaaaaaattacaaaagaaagatggttcaatgaattttattcaacttagcatgcga
tttgaagtagcagaggtgttgattcagttctatcatcttgtgggagactgtgaactacct
gtgctggaaatgggtgttttaggattaggaacagaagttgagattagaaaatttgacttg
aaaggaaatgcctttttgaaagaattatggttaaaatgtccaggatacttagatgaacac
aagaaaccagtttatttgatcacgactctggataacacaatggaagatttattaacattg
gaattcatgagggttgaaaaaaatgcaccaaatttgaatagtacctataacaatgtttta
caacttattaaggtgaatttttcctctttggatattcatttacacactgaagcacttctg
aatacaatgaattatcttaataatattctcccggaattaggggaaacgtctgcctcagtg
tctgctgcagagcctgaagacaaaggagatatcattaaaaaacttgctttaaagctaccc
acgaatgaagatattattaccttgcagcttttggcagagttatcttgtttacggattttt
attcaggatcagaaacaaaacatttctgaaattaagattgaagggcttgattctgagatg
attatgaagcctttagtcaccgaaataaatgcaaaactaaggaatataattgtgttagat
tctgataaaatggctgtctacaaaaaggctgtctatatcactggaaaagaagttttcagc
ttcaaaatgatttcttacatggatgcaactgctggctatgcatacacagatatgagtgtg
gttgatgctcgggtttatttaactgttggttgcattgaagtagtgttcgtcacaaaattc
ctatattctatattggcatttataaataattttcaagcagttaaaaatgccttggctgaa
gcaactgttcaagcagcagggatggctgctgatggtgtaaaagaactggcccgaaagagt
tctaggtttgcattggatgttaacatcaaggctccagtggtgctcattccacagtctcca
gtgtctcggaatgtttttgttgctgattttggattaattacaataaaaaatatatttgtt
accgtaacagagacccagagtaatattccacctgtaattgatttgataacaataaagttg
agtaaaatgagactatacaggtctcagtttatgaataatacataccaggaagtgctggac
ctactactacctttgaacctggaagtgattgttgaacgaaacttatcttgggaatggtac
aaggaagttccttgttttaatataaaagctcagctaaaacccatggagttcattctcagt
caagaagatttaacaaccgtctttcaaacattgtacggcaatatatggtatggacgagat
gttcccgctccatcttctgtaaataaaggcccagagatcatgaccactgaagtcaccagt
acttcctaccattcgggagctactatggtgacctctgctgtggtggaggtgcatccacag
gcttccccggccaacacaaccctgaatgtgagtttccagaccgatcatctcatcatgaca
ctttacagtccggggccagaccaggcctcctttacagatgttcgtgatccttctctagaa
cttgctgaatttaaactggagaatattataagtgatttaaaagtgtacacagatgattct
atggtcttttctttctcattaaaaaactgtattttagatgataaaaggccacatgtcatg
aaagccactcctagaatgataggactgactgtcggctttgacaagaaggacatggtggac
gtgaagtacagacagatcagagatgtttttgtgactgatgtggttgtccaagagatgtat
gtttgtgcaagcgtggagtttctgatgactgttgcacgtgtcttttttgatgcctacatg
actagtacagctttagaaaccagtgttcaaacatggactactagagaagcacctgtacag
gaattaaggaagtgggaaatgaatattcttattaaaaacccagaaattgtgtttgtggct
gacatgacaagaaatgatgctcctgccttagtcattacgacacagtgtgaaatttgctgc
aaaggagaacctgaaagcaatacggtgactgctgccattaaggatttccaagtcagagca
tgcccatttcttccggtcaagagaaagggcagagtcaccactgttttgcagccttgtgac
ttgttttatcaggctactcagttcggtacagatccacaaacgattgacatatcagtaaaa
tctcttacactaaaggtttcaccagttatcataaataccataataactgttacttcagca
ctgtatacaactaaggagactgtccccgaagaaagcacttctaatgtagcacatttatgg
gacaagaaggatacaaagaatctaaaaatgtggtttcttgaagaatcaaatgaaactgaa
aaagtagttcccacagatgaagtgatgccaggaggagagacactgaacttaaatattgat
tctatttttattgttcttgaggctggaattggtcatagaacagttccaatgctattggca
aagtcaagctttttgggggaaagcaaaaactggaggacattaataaaccttcactgtcag
cttgaactggaagttcactattttaatgaaatgttcggtgtttgggaacctttactggaa
cccttagaaattgatcagagtgatgattttagaccttggaatcttggcatcaagatgaaa
aagaaagcaaaagaggccattgttgagtctgatagtgaagaagagaactacaaagtacca
gaatataagactgccataagttttttttccagagaccaattaaacattacactgtccaaa
tgtggccttgtgatgttaagtaatttagttgaggcattcactgaagctgctactggatct
tcagctgtcttcctcagagatctagcaccatttatgattttaaattctcttggacttact
gtctctgtttcaccaagtgattcttttcacgtacttaatgttcctttggcaaaatcatat
gaactgaaaaacgaagaaagtttaagtatggattatgtccgaactaaggacaatgatcat
ttcaatgcaatgaccagcctaagcagcaagctcttcttcattctccttacacctgctaac
cactctgtcgccgacaagattccattaacaaaagtgggacgccgtctgtacactgtaaga
cacagagaatctggggttgaaagatctatcatttgtcaaattgacacagttgaaggaagt
aagaaggtaacaatccgctcaccagtgcagattaagaatcatttttcaatcccaatttcc
gtttttgaaggagatactttattgggaattgcttcacctgaaaatgaattcaacatacca
ttagcatcttaccgatcatccctttccttgaagccagaagatgaggactaccagctatgt
gaaggaatcgactttgaagaaatcataaaacatgatggacagcttctgaagaagaaatgt
agatctataagcccttctaagaaatcgtttgttattaatattgtcccagaaaaggacaat
ttggcttccctgtcagcgtattcagaagatggctgggacttaccatatgtgatgcacttg
tggccacccatcctcatccggaatcttcttccctacaaaattgcttattaccttgagggc
attgagaataccgtttgtactctaagcgaaggacattcatcacagatctataatgtagaa
atggaccaggccaagctacacttaaaattacttgactatcttaatcatgactggaaaagt
gaatttcagatagatcctaaccaacaagacatcaatttcatcaactttacctgtctcaca
gaaatggaaaagagtgatttggatattgctatccatatgacttacaatactggacagaca
gttgtggcatttcatagtccatactggatggtcaataaaactaatcggatgttacagtac
aaagcagatgggattcaccggaagcatccacctaattataaaaagccagttctcttttcc
tttcagccaaaccacttttttaacaacaataaggttcagcttatggtaactgatagtgaa
ctttctgatcagttttcaatcgatactgttggtagtcatggagccattaaatgcaaaggc
ctgaaaatggaatatcaagttggtgtcactatagatctcagcagttttaatattaccaga
attgtgacattcattcctttttatatgattaaaaacaaaagcagataccatatatcagtg
acagaagaaggaagtgacaaatggctttctcttgacttagagcagtgtatccccttttgg
cctgagaatgcctccgatattcttcttattcaagttgagaggagtgaaggtcctccgaaa
aggatatattttaacaagcaagatagttgtattttattgcgactggataatgagcttgga
ggtgttattgcagaagttaatttggctgagcactctacagttattacattttcagattac
catgaaggagcagctacgttcctattaataaaccataccaagagtgaccctgttcagtac
aaccaaagttctctgagtgaaatcgaagattcccttcctcctggaaaagcagtatattac
acgtgggctgatccagtgggctctcggaagctgaagtggagctgtgggcaaagctatggt
gaagtaacacataaggacgatatgatgacgcccataagtgtggggaaaaaaaccatttat
ttagtgtcgttctttgaaggcctgcagcgtattattttattcactgaagatccaagagtg
tttaaagtaacatatgagagtgagaaggcagagttagcggagctggaagttgtgctggca
ttgcaggatgtcgggatctcacttgtcaataactatacaaagcaagaagtcgcttacata
ggcattacaagttctgatgtggtttgggagacaaaaccaaagaaaaagtccaggtggaag
ccaatgagtgtgaaacacaccgagaagctggagaaggaattcagggagtacacagagtct
tcgcccttggaggacaaggttgttgagttggacaatagcattccagttctcttaacacct
agtggcaatgacatgaaaattctggaaccacatgtgatagctgtccggagaaattacctc
ccagcactaaaagtagaatataacacatctgcgcatcagtcatcattcagaattcagatt
tatagaatacagatccaaaatcagattcatggtgctatttttcctttcgtgttttatcct
attaaacctccaaggtctgtcaccatggactcagcaccaaagccatttacagatgtcagt
attgtcatgagatctgcaggacattcccaaatatcacgcattaagtatttcaaagtgttg
attcaagaaatggatctcaggttggatcttgggtttgtgtatgccctagcagaccttgtc
ccaaaaaccgaagtgactgagaaaacagaggtggaatattttcacagggatgtagaagca
tttgaacaagaatttgaagtggtttcatcagtagatcaatcacaagtcaatctctttgaa
tattttcatatatctcctatcaagttgcatttgagtgtttcactgagctctggtagagac
gaagctaaagatacagaacaacatggaggactaattcctgtgcattctttaaatcttttg
ctgaagagtattggtgccacccttacagatgtacaagatgtagtttttaagcttgccttt
tttcaactcaactaccagttccatacaacatctgaattgcaatctgaagtaataagacac
tattccaaacaggctattaaacaaatgtacgtactcattcttggacttgatgttttggga
aatccctttggcttaattagagaattttcagaaggagtagaagcatttttttatgaacct
taccagggggccatccagggtcctgaagagtttgtggagggaatggcactaggattgaaa
gccctggttggcggagccgttggtggactagctggcgccgcctccaaaatcaccagtgct
atggctaaaggggtagcagccatgacaatggatgaagactaccagcagaagagaagagaa
gccatgaataagcagcctgctggccttcgagagggcatcactcgaggagggaaaggcctt
gtctctggttttgtaagtggcattacagggattgttacaaaaccaattaaaggtgctcaa
aaggaaggagcagcggggttcttcaaaggtgttggaaaaggtttagttggagcagtggca
aggccaacgggtggcatcatagatatggccagcagtacctttcagggaatcaaaagagct
acagagacttctgaagtagaaagtttacgacctcccaggttctttaatgaagatggagtc
atcagaccttacaggttgcgcgatggtacaggaaatcaaatgttacaggtcatggaaaat
ggaagatttgcaaaatacaagtattttacccacgtcatggtcaataaaactgatatgttc
atgataacaagatgtggtgtgttgttcgtaacaaagggaacatttggacagctcacatgt
gagtggcagtacacttttgatgagttcaccaaagagccattcattgtccatgggagaaga
ttgcgcatcgaagcaaaggaacgggtgaaatctgtattccatgccaaagaatttggaaaa
ataattaacttcaagactccagaagatgctaggtggatccttacaaagctggaagaagca
agagaaccatccccaagactgtga
DBGET
integrated database retrieval system
