Rattus norvegicus (rat): 311166
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Entry
311166 CDS
T01003
Symbol
Clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
311166 (Clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
311166 (Clp1)
Enzymes [BR:
rno01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
311166 (Clp1)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
311166 (Clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
AAA_18
MMR_HSR1
TniB
AAA_16
AAA_22
nSTAND3
CbiA
AAA_10
Motif
Other DBs
NCBI-GeneID:
311166
NCBI-ProteinID:
NP_001009599
RGD:
1307679
Ensembl:
ENSRNOG00000007416
UniProt:
Q5PQL4
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All DBs
Position
3:complement(90213461..90217165)
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AA seq
425 aa
AA seq
DB search
MSEESNDDKKPTTKFELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAG
AKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGYGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDVEHQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggaatccaatgatgacaagaagccaacgaccaagtttgaactagagcgagaa
acagagcttcgatttgaggtggaggcatctcagtcagttcagttggagttgctggctggc
atggcagagatctttggcacagaactgaccagaaacaagaaattcacctttgatgctggt
gccaaggtggctgttttcacttggcatggctgttctctgcagttgagtggccggaccgag
gtggcttatgtctctaaggacacccctatgttgctttaccttaacactcatacagccttg
gagcagatgcggaggcaggcagaaaaggaagaagagagaggcccccgagtgatggttgtg
ggtcctactgatgtgggcaagtccacggtgtgccggctgctactcaactacgcagtgcgt
ttgggccgacgtcctacttacgtggagttggatgtagggcagggctctgtgtccattcct
ggtaccatgggggccctgtacattgagcgacccgcagatgtggaagaaggtttctccatc
caggcacctcttgtgtatcattttggctccaccactcctggcaccaacatcaagctttac
aacaagattacatctcgtttagcagatgtgttcaaccaaaggtgtgaagtgaatagaaga
gcttctgtgagtggctgtgtcatcaacacctgtggctgggtcaagggttatggttaccag
gccctggtgcacgcagcttcagcctttgaggtggatgtggttgtggttctggatcaagaa
cgactgtacaacgagttgaaaagggacctgcctcattttgttcgaactgtgctgctccca
aaatcagggggtgtggtagaacgctccaaggacttccggcgggaatgtagggatgaacgt
atccgtgaatatttctatggattccgaggctgtttctatccccatgccttcaatgtcaaa
ttttctgatgtgaaaatctacaaagttggggcacccaccatcccagactcgtgtttacct
ctgggcatgtctcaggaagacaatcagctcaagttagtacctgtcacccctggtagagat
atggtgcaccatctcctgagtgtcagcactgctgagggcacagaagagaacctttctgag
acaagtgtggctggattcattgttgtgaccagtgtggacgtggaacaccaggtgtttact
gtcttgtctccagccccccgcccactgcctaagaactttcttctcatcatggatatccgg
ttcatggatctcaagtag
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integrated database retrieval system