Rattus norvegicus (rat): 311909
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Entry
311909 CDS
T01003
Symbol
Rc3h2
Name
(RefSeq) roquin-2
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rno03000
]
311909 (Rc3h2)
04121 Ubiquitin system [BR:
rno04121
]
311909 (Rc3h2)
Transcription factors [BR:
rno03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
311909 (Rc3h2)
Ubiquitin system [BR:
rno04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
311909 (Rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
DUF4844
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
311909
NCBI-ProteinID:
NP_001101309
RGD:
1304833
Ensembl:
ENSRNOG00000009196
UniProt:
A6JET0
LinkDB
All DBs
Position
3:complement(41531319..41596496)
Genome browser
AA seq
1187 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKMSATVRTFPLLNKVAVNSTVTTTAGNVISVI
GSTETTGKIVPSTNGISNTESSVSQLIPRSADSAGRTLETVKKVGKVGTNGQNAGPSAES
VSENKIGSPPKTPVSNAAATSAGPSNFGTELNSLPPKSSPFLTRVPVYPQHSENIQYFQD
PRTQIPFEVPQYPQTGYYPPPPTVPAGVTPCVPRFVRSNNVPESSLPPASMPYADHYSTF
SPRDRMNSSPYQPPPPQQYGPVPPVPSGMYAPVYDSRRIWRPAMYQRDDIIRSNSLPPMD
VMHSSVYQTSLRERYNSLDGYYSVTCQPPNDPRTTVPLPREPCGHLKSSCEEQLRRKPDQ
WTQYHTQKTPVSSTLPVATQSPTPPSPLFSVDFRSDFSESGSGTKFEEDHLSHYSPWSCG
TIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFEAQRRTKEEDPIIPFSDGPII
SKWGAISRSSRTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGNDATSSA
HYIERDRFIVTDLSGHRKHSSTGDLLSLELQQAKSNSLLLQREANALAMQQKWNSLDEGR
HLTLNLLSKEIELRNGENDYTEDTVDTKPDRDIELELSALDTDEPDGQSEQIEEILDIQL
GISSQNDQLLNGTAVENGHPVQQHQKDPVKQKRQSLGEDHVILEEQKPILPVTSCFSQPR
PVSISSASCLPITTSVSVGNLILKTHVMSEEKNDFLKPIANGKMVNS
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggccgctcaatggacagagtttctgtcctgtccaatctgctataatgaa
tttgatgagaatgtgcacaaacccatcagtttaggttgttcacacactgtttgcaagacc
tgcttgaataaacttcaccgaaaagcgtgtccttttgaccagactgccataaacacagac
attgatgtgctccctgtcaactttgcacttcttcagttagttggagcccaggtaccagat
catcagtcaataaagttaagtaatctaggtgagaataaacactatgaagtggcaaaaaaa
tgtgtggaggatttggcactctacttaaaaccactaagtggaggtaaaggtgtagctagt
ttgaaccagagtgccctgagccgtccaatgcaaaggaaactagttacacttgtaaactgt
caactggtggaggaagaaggtcgtgtcagagctatgcgagcggcccgttcactaggagaa
agaactgtgacagaactgatactgcagcaccagaaccctcagcagctgtctgccaacctg
tgggctgctgtcagggctcgaggatgccagtttctagggccagctatgcaagaagaagcc
ttgaagttggtattgctggcattagaagatggttctgctctctctaggaaagttctggta
ctttttgttgtgcaaagactagaaccaagatttcctcaggcatcaaaaacaagtattggc
catgttgtgcagctactgtaccgagcttcttgttttaaggttactaaaagggatgaagac
tcttccctgatgcagctgaaggaggaatttcggagttatgaggcactacgcagagaacat
gatgcccaaattgttcatattgccatggaagcaggactccgtatttcacctgagcagtgg
tcttcactgctatatggggacttggctcataaatcacacatgcagtctatcattgataag
ctacagtctccagaatcatttgcaaagagtgtccaagaattgacaattgttttgcaacga
acaggtgaccccgctaatttaaatagactgaggcctcatttagagcttcttgcaaacata
gatcctaatccagatgctgtttcaccaacttgggagcaactggaaaatgcaatggtagct
gttaaaacagtggttcatggtcttgtggacttcatacaaaattatagtaggaaaggtcat
gagacaccccagccacagccaaacagcaagtataaaactagtatgtgccgagatttacga
caacaagggggttgtccacgaggaacaaattgtacatttgcccattctcaggaagagctt
gaaaagtaccgattaaggaacaaaaagatgagcgcgactgtaagaacatttcctcttctg
aataaagttgctgtaaacagcactgtcacaaccacagccggaaatgtcatttctgtcata
ggaagtactgaaacaactgggaaaattgttccaagtacaaatggaatttcaaatacagaa
agcagtgtttcccagctaatcccacgaagtgctgacagtgcaggaaggactttggagact
gtgaagaaagttgggaaagttggcactaatggtcagaatgctgggccctctgcagagtct
gtgtctgaaaataaaattggttctccacccaagactcctgtaagtaatgcagcagctacc
tccgctgggccctctaattttggaacagagctgaattccctgcctcccaaatccagccca
tttctaactcgagttccagtatatcctcagcattctgaaaacatccagtattttcaagat
ccaaggactcagataccttttgaagtcccacaatacccacaaacaggatactacccacca
cctccaacggtaccagctggtgtgactccctgtgttcctcgctttgtgaggtccaataat
gttccagagtcctccctcccacctgcttccatgccatatgctgatcattacagtacattt
tcccctcgagatcgaatgaattcttctccttaccaacctcctcctccgcagcagtatgga
ccagttcctccagtaccctctgggatgtatgctcctgtgtatgacagcaggcgcatctgg
cgcccagctatgtaccagcgagatgacattattagaagcaattctttacctccaatggat
gtgatgcactcatctgtctatcagacatctttacgggaaagatacaactcattagatggt
tattattcagtgacttgtcagccaccaaatgacccaaggacaactgtgcctttaccaagg
gaaccttgtggtcatttaaaaagcagttgtgaggaacagttaagaagaaagccagatcag
tggacacagtatcatacccagaagacacctgtctcttcaactcttcctgtggcaacacag
tcaccaacaccaccttctcctttgttcagtgtagacttcagatcggatttctctgagagt
gggagtggcacaaaatttgaggaagaccatctttcccattattctccttggtcttgtggc
actataggctcttgtataaatgccattgattcagagcccaaagatgtaattgccaattca
aatgctgtgctgatggacctggacagtggtgatgtaaagagaagagtgcatttatttgaa
gctcagagaaggacaaaagaagaagacccaattattccctttagtgacggacccattatc
tcaaaatggggtgcaatttcccgatcctcccgaacaggttaccatacaacagatcccgtc
caggcaactgcttcccaaggaagtgcaactaagcccatcagtgtatcagattatgtccct
tatgttaatgctgtcgattcaaggtggagttcatatggtaacgatgccacatcatcagca
cactatattgaacgggacagattcattgttaccgatttatctggtcatagaaagcactcc
agtaccggagacctcttgagccttgagcttcagcaggccaagagtaactcattacttctt
cagagggaagctaatgctctggccatgcaacaaaagtggaattccctggatgaaggccgt
catcttactttaaatctcctaagcaaggaaattgaactgagaaatggagagaatgattac
acagaagacactgtagataccaagcctgatagagatattgagttagaactttcagccctt
gatactgatgagcctgatggccaaagtgaacaaattgaagaaattctggacatacaactt
ggtatcagttctcaaaatgatcagttgctaaatggaactgcagtggaaaatggtcatcct
gtccagcagcaccaaaaggaccccgtaaagcagaagagacagagtttaggtgaagaccat
gtgattctggaggagcaaaaaccaattctgccagtaacatcttgctttagccagccacgc
ccagtgtctattagcagtgcaagctgcctccctatcaccacatctgtcagtgttggcaac
ctcattctgaaaactcacgttatgtctgaagagaaaaacgactttttaaaacctattgca
aatgggaagatggttaacagctga
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