Rattus norvegicus (rat): 312083
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Entry
312083 CDS
T01003
Symbol
Vps50
Name
(RefSeq) syndetin
KO
K23288
syndetin
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
312083 (Vps50)
Membrane trafficking [BR:
rno04131
]
Protein recycling
Others
EARP complex
312083 (Vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
312083
NCBI-ProteinID:
NP_001166982
RGD:
1304751
Ensembl:
ENSRNOG00000009894
UniProt:
F1LSG8
LinkDB
All DBs
Position
4:32439101..32540299
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AA seq
964 aa
AA seq
DB search
MQKIKSLMTRQGLKSPPESLNDLGAFESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
YFSADPFDIVKYELEKLPPVLNLQELEEYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
RVTSLQTGLQLAAVICTNSRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDVNHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
DTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDSEETAAASEG
SNVMSTEETNFDRGYVKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIVS
RLMQVGEEFCGSKSEVLQESIRKQSINYFKNHHRIRLDELRMFLENETWELCPVKSNFSI
LQLHEFKFLEQSRSPSVSPSKQPSATSSKPVTLFEQYCSGGNPFEIQADHKDEETEDVLA
SNGYESDEQEKSAYQDYDSDSDVPEELKRDYVDEQTGDVPVKSVSRETLKSRKKSDYSLN
KVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSL
ESTGLGLSSSRLRTTLNRIQESLIDLEGSADPTATLTAAEERKEKVPSPHLNQLVILTSG
DTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPI
YWIVAGKAIDYEQMLLLMTNVKWDVKEIMSQHNVYVDALLKEFEQFNKRLNEVSKRVRIP
LPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDK
EFVEIYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDID
RPKR
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaatcaaatctcttatgacccggcagggtctgaagagccctccggagagcctc
aatgatctgggtgcctttgagagccttcgggtccctggaaaggaggaattcagggaactt
cgagagcagccaagcgaccctcaagctgaacaagagctaattaatagtattgaacaagtt
tatttttctgcggatccatttgatattgttaaatatgagctggagaagcttcctcctgtt
ctcaatctgcaagagctagaggagtacagagacaaattaaagcaacagcaagctgcagtc
tctaaaaaagtggcagatttgattcttgagaaacagcctgcttatgtaaaggagcttgag
agagttacatcgctgcagacaggtcttcagttggctgctgttatctgcacaaacagcagg
agacacttgaatattgcgaaggaaggttttactcaggctagcttaggccttcttgcaaat
caaaggaaacgtcagttgctgattggacttctgaagtcactgagaaccattaaaacattg
caaagaaccgatgtacgcttaagtgaaatgctggaggaagaggactatccaggagctatt
cagctgtgcctggaatgtcagaaggctgccagcacttttaaacactacagctgtataagt
gagctgaattcaaagctgcaggatactttggagcaaattgaggaacagttggatgtagct
ctttccaagatctgcaagaattttgacgttaaccattacaccaaggttcagcaagcttat
cggcttcttggaaaaacacagactgcaatggatcagcttcatatgcacttcactcaagcc
attcacaacaccgtgtttcaagttgtgcttggctatgtggagctgtgtgcaggaaacaca
gatacaaagttccagaagcttcagtataaagatctctgtacgcacgttacaccagacagc
tatattccatgcctggcggacctgtgcaaagcactgtgggaagtcatgctgagctactac
agaaccatggagtggcatgagaaacacgacagtgaggaaacagctgcagcttctgaagga
agtaatgtgatgagtactgaagaaaccaattttgatcgtggctatgtaaaaaagaaatta
gagcatggccttacgcgaatatggcaggatgttcaactaaaagtaaaaacctacttgctt
ggaactgatttatctattttcaaatatgatgatttcatctttgttctggatatagtcagc
aggttgatgcaagttggagaagagttttgtggtagcaagtctgaagttttgcaggaatcc
attagaaaacaaagtatcaattacttcaagaaccaccataggataagacttgatgaactg
agaatgttcttagagaatgagacatgggagctttgccctgttaagtcaaatttcagcatc
ttgcagcttcatgagtttaaattcctggaacagtctcgatccccatcagtttcacctagt
aagcagccatcggcaacttcttccaaacctgtgactttgtttgagcagtactgcagtggt
gggaatccatttgaaattcaagctgaccacaaagacgaagaaacagaagatgtcttagcc
tctaatgggtacgaatctgatgagcaagagaagagtgcctatcaggactatgacagcgac
agcgacgttcctgaggagctgaagcgcgattatgtagatgagcaaaccggcgatgtgccc
gtaaagagtgtttcacgagagacactgaagagcaggaagaaatcggattacagtctaaat
aaagtgaatgcacccatcttaacaaacacaaccttgaatgtcataaggcttgttggaaag
tacatgcagatgatgaacatccttaagccaatcgcctttgatgttatccatttcatgtct
cagctctttgattattacttgtatgccatatacaccttttttggtcggaatgattcattg
gaatcaacaggacttggccttagtagtagcagactaagaacaactctaaacagaattcag
gaaagccttattgacctggagggctcagctgatcctactgccactctcacagcagccgag
gaaagaaaggagaaggtacccagcccacacctcaatcagctagtgattttgacatctggg
gatacattgtatgggttggcagagagagtggtagccacagaatccttagtgttcttggct
gagcagttcgagttccttcaaccacatttggatgctgtgatgcctgcagtcaaaaagccc
ttcctgcagcagttttactcccagacagtctcaactgccagtgaactgcgcaaacccatt
tactggattgtggctggtaaagctattgattatgaacagatgcttctcctaatgacaaat
gtgaagtgggatgtcaaagagatcatgtcacagcacaacgtctatgtagatgcattgcta
aaggaatttgaacagtttaacaagcggttaaatgaagtttctaagagagttcggataccc
ttgcctgtatcaaatatactttgggaacattgtatacgattagctaacagaactattgtg
gaagggtacgccaatgtcaagaagtgcagtaatgagggacgtgccttgatgcaattggat
tttcaacagtttttaatgaaactcgagaaactaactgacattaggcctattcctgataaa
gaatttgtggaaatatatatcaaagcctactacctgactgagaatgacatggagcgttgg
atcaaagagcaccgggaatattcaacgaagcagttgaccaacctggtgaatgtttgcctg
ggatctcatattaataagaaagcaagacagaagctcctagcagctatagatgatatagac
agacctaaacgataa
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