Rattus norvegicus (rat): 312936
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Entry
312936 CDS
T01003
Symbol
Sox17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
312936 (Sox17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rno03000
]
312936 (Sox17)
Transcription factors [BR:
rno03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
312936 (Sox17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HTH_24
Motif
Other DBs
NCBI-GeneID:
312936
NCBI-ProteinID:
NP_001101372
RGD:
1305371
Ensembl:
ENSRNOG00000027357
UniProt:
A6JFJ9
G3V923
LinkDB
All DBs
Position
5:19814345..19819859
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AA seq
423 aa
AA seq
DB search
MSSPDAGYASDDQSQPRSAQPAVMAGLGPCPWAESLSSLGDVKVKGEVVASSGAPAGTSS
RAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE
AERLRVQHMQDHPNYKYRPRRRKQVKRMKRVEGGFLHALAEPQAGALGPEGGRVAMDGLG
LPFPEPGYPAGPPLMSPHMGAHYRDCQGLGAPALDGYPLPTPDTSPLDGVEQDPAFFAAP
LPGDCPAAGAYTYAQVSDYAVPAEPSAGPMRVGPDPSGSAMPGILAPPSALHLYYGAMGS
PAASAGRGFHAQPQQPLQPQPPPPPPPPPPPQQHPTHGPGQPSPPPEALPCRDGTEPNQP
TELLGEVDRTEFEQYLHFVYKPEMGLPYQGHDCGVNLSDSHGAISSVVSDASSAVYYCNY
PDI
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcccggatgcgggatacgccagtgacgaccagagccagcctcggagcgcgcag
cccgcggtgatggccgggttgggcccctgtccctgggccgagtccctgagctctctcggg
gacgtaaaggtgaaaggagaggtggtggcgagtagcggggcgccagccgggacctcgagt
cgagccaaagccgagtctcgcatccggcggccgatgaatgcctttatggtgtgggccaaa
gacgaacgcaagcggctggcacagcagaacccggatctgcacaacgcagagctgagcaag
atgctaggcaaatcctggaaggcgttgaccttggcggagaagcggcccttcgtggaagag
gccgagcggctgcgtgtgcagcacatgcaggaccatcccaactacaagtaccggccgcgg
cggcgcaagcaggtgaagcgcatgaaacgggtggagggaggcttcctgcacgctctcgcc
gagcctcaggccggcgcgcttggtcccgagggcggccgcgtggccatggatggcctgggt
ctgcctttcccggagccaggctatccggccggcccgccgctgatgtccccgcacatgggc
gcccactaccgtgactgccagggactgggcgcacccgcgctcgacggctaccctctgccc
actccggacacatccccgttggatggcgtggagcaggacccggctttctttgctgccccg
ctgccaggggactgcccggcggccggagcctacacgtatgctcaggtctcggactatgcg
gtgcccgcagagccgtccgctggccccatgcgagtgggacccgacccctccggctctgcg
atgccggggatcctggcgccccccagtgctctgcacctgtactacggcgcgatgggctcg
cccgcggcaagcgccgggcgcggtttccacgctcagccccagcagccactgcaaccgcag
ccaccgccgccaccaccaccgcctccaccgccgcagcagcacccgacgcacggtccgggg
cagccttctccacctcccgaggctctgccctgccgggatggcacggaacccaaccagccc
actgagctactaggggaggtggaccgcacggaattcgaacagtatttgcactttgtgtat
aagccggagatgggtcttccctaccagggacacgactgcggtgtgaacctctcggacagc
cacggagccatttcctccgtggtgtccgacgctagctcagcggtctactactgcaactac
cctgacatctga
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