Rattus norvegicus (rat): 313308
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Entry
313308 CDS
T01003
Symbol
Thoc2
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03013
Nucleocytoplasmic transport
rno03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
313308 (Thoc2)
09122 Translation
03013 Nucleocytoplasmic transport
313308 (Thoc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
313308 (Thoc2)
03041 Spliceosome [BR:
rno03041
]
313308 (Thoc2)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
313308 (Thoc2)
Spliceosome [BR:
rno03041
]
Complex C
Other components
EJC/TREX
313308 (Thoc2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
313308 (Thoc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
313308
NCBI-ProteinID:
NP_001178685
RGD:
1561623
Ensembl:
ENSRNOG00000007315
LinkDB
All DBs
Position
X:complement(125500549..125615139)
Genome browser
AA seq
1594 aa
AA seq
DB search
MAAATVVVPAEWIKNWEKSGRGDFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGN
LKHEQASSVLNDISEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSD
TVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELG
QDLSGTITSDLILENIKSLIGCFNLDPNRVLDVILEVFECRPEHDDFFISLLESYMSMCE
PQTLCHILGFKFKFYQEPSGETPSSLYRVAAVLLQFNLIDLDDLYVHLLPADNCIMDEYK
REIVEAKQIVRKLTMVVLSSEKLDERDKEKDKDDEKVEKPPDNQKLGLLEALLKIGDWQH
AQNIMDQMPPYYAASHKLIALAICKLIHITVEPLYRRVGVPKGAKGSPVSALQNKRAPKQ
VESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSDGSKQEDKEKTEVIL
SCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNGHPLLVK
VKAQTIDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDS
LKYLTSLNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIDLAGL
LQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIR
NTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQF
GGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGS
KQQHKVHKYITSCEMVMAPVHEAVVSLHVAKVWDDISPQFYATFWSLTMYDLAVPHTSYE
REVNKLKVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQMEHVQRVLQRLKLEK
DNWLLAKSTKNETITKFLQLCIFPRCIFSAIDAVYCARFVELVHQQKTPNFSTLLCYDRV
FSDIIYTVASCTENEASRYGRFLCCMLETVTRWHSDRATYEKECGNYPGFLTILRATGFD
GGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNL
GQALERRVNKICQEEKEKRPDLYALAMGYSGQLKSRKSHMIPENEFHHKDPPPRNAVASV
QNGPGGGTSSSSIGSASKSDESGAEETDKSRERSQCGTKAVNKASSTTPKGNSSNGNSGS
NSNKAVKENDKEKVKEKEKEKKEKTPATTPEARVLGKESKEKPKEERPNKDDKARETKER
TPKSDKEKEKFKKEEKAKDEKFKTTVPSVESKSTQEREREKEPSRERDVAKEMKSKENVK
GGEKPPVSGSLKSPVPRSDISEPDREQKRRKIDTHPSPSHSSTVKDSLIDLKDSSAKLYI
NHNPPPLSKSKEREMDKKDLDKSRERSREREKKDEKDRKERKRDHSNNDREVPPDITKRR
KEENGTMGVSKHKSESPCESQYPNEKDKEKNKSKSSGKEKGSSDSFKSEKMDKISSGGKK
ESRHDKEKIEKKEKRDSSGGKEEKKHHKSSDKHR
NT seq
4785 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcgactgtggtggttcccgcagagtggataaagaactgggagaaatcaggg
agaggcgattttttgcatttatgccggattctcagtgaaaacaaaagccatgacagttcg
acctacagagattttcagcaagctctctatgagttgtcataccatgtcattaagggaaat
ttaaagcacgaacaggcatccagtgttcttaatgacattagtgaattccgtgaggatatg
ccttctatccttgctgacgtgttctgcatattagatattgagacaaattgtttagaagaa
aaaagcaagagagactattttacacaattggtattagcatgtttgtatttagtttcagac
acagttctgaaggaacgattggatccagaaactttggaatctttagggcttatcaaacaa
tcacagcagttcaaccaaaagtcagttaaaatcaagacaaaactcttttataagcagcaa
aaattcaatttattaagagaagaaaatgaaggttatgccaagctgattgctgaactgggg
caagatttatctggaactattactagtgatttaatattagaaaatatcaaatctttaata
ggatgctttaatctggatcccaatagagttttggatgtcattttagaagtatttgaatgc
aggccagaacatgatgacttctttatatcgttattagagtcttacatgagtatgtgtgaa
ccacaaacactgtgtcatattcttggattcaaattcaagttttatcaggaaccaagtggt
gagacgccctcgtctttgtacagagttgcagcagtccttctgcaatttaatctcattgat
ctagatgatctttatgtacatctcctcccagctgataattgtattatggatgaatacaaa
cgagaaattgtggaagctaagcaaattgtaagaaaactcacaatggttgtactgtcttct
gaaaaacttgatgaacgagacaaagaaaaggataaagatgacgagaaagtagaaaagcca
cctgacaaccaaaaacttggtttgttggaagctttgttaaagattggtgattggcagcat
gcacagaacatcatggatcagatgcctccgtactatgcagcttcacataagctaatagct
cttgctatttgcaagctcattcacataactgtcgagcctctctaccgaagagttggtgtt
cctaaaggtgctaaaggctcacccgttagtgctttgcaaaataagagagcaccgaagcaa
gtagagagctttgaagatttgaggagggatgtattcaatatgttctgctaccttggtcct
cacctctcacatgatcccattttatttgcaaaagtcgtgcgcataggcaagtcatttatg
aaggagtttcagtctgatggaagcaaacaagaagataaagagaaaacggaagttatcctt
agctgtttacttagcattactgaccaggtattacttccatctctctctttgatggactgc
aatgcttgcatgtctgaggaactgtggggaatgttcaagacatttccctatcagcataga
tatcgtctatatggccagtggaagaatgaaacttataatgggcacccacttttagtaaaa
gttaaagctcaaacaatagaccgagccaagtatatcatgaagcgtctaaccaaggaaaat
gtgaagccttcgggaagacaaattggcaagctgagccatagtaatccaacaattttgttt
gattatatcttgtcacaaatccagaaatatgataacttaataacacctgtagtagattca
ttgaaatacctcacttcattgaattatgatgtcttggcctattgtatcattgaagcttta
gctaatccagaaaaggagagaatgaaacatgatgacacaaccatctcaagctggcttcaa
agtctggcaagtttctgtggtgcagtattccgtaaatacccaatcgatcttgctggtctt
cttcagtatgtagccaatcaattaaaggcaggcaaaagttttgacctactaatattgaaa
gaagtggtacaaaaaatggcaggaatcgaaattacagaggagatgacgatggagcagtta
gaggccatgactggtggggagcagctgaaggctgagggtggttatttcggccagatcaga
aacactaaaaaatcttctcagagattaaaggatgcactactggaccatgatcttgctctt
cctctctgtttgctcatggcacaacagaggaatggggtaatttttcaggagggtggagag
aaacacttgaaacttgtggggaagctctatgaccagtgtcatgataccctagtacagttt
ggtgggtttttagcatcaaatctaagtacagaagattatataaaacgagtgccttcaatt
gatgtgctctgtaatgaatttcatacacctcacgatgcagcattttttctgtctaggcca
atgtatgcacaccatatttcatcaaaatacgatgaacttaaaaaatcagaaaagggaagt
aaacagcaacataaagtccataaatacattacatcatgtgaaatggtgatggcacctgtc
catgaagcagtggtctccttgcatgttgccaaagtctgggatgatatcagccctcagttc
tatgctacattttggtcgttgacaatgtatgaccttgcagttccacataccagctatgaa
agagaagtcaataaacttaaagtccagatgaaagcgattgatgacaatcaggaaatgcct
ccaaataaaaagaagaaagaaaaggagcgttgcacggcccttcaggacaagctccttgaa
gaagaaaagaagcagatggaacatgttcagagagtacttcagagactgaaactagagaaa
gacaactggcttttagcaaagtctaccaaaaatgagaccatcacaaaatttttacagctg
tgtatatttcctcgatgcattttttcagcaattgatgctgtttattgtgctcgttttgtt
gaattggtacatcaacagaaaactccaaatttttccacacttctttgctatgatcgagtt
ttttctgacataatttacacggttgcaagctgcactgaaaatgaagctagtcggtatggg
agattcctttgctgtatgttagagacagtgaccaggtggcatagtgatagagccacttat
gagaaggaatgtggaaactatccaggattccttaccatattacgggcaactggatttgat
ggtggaaacaaagctgatcagttagattatgaaaattttcgacatgttgtccacaaatgg
cattacaaattaaccaaggcctcggttcattgccttgagacaggcgaatatactcacatc
aggaatatattgattgtgctaacaaaaatacttccttggtacccaaaagttttgaatctg
ggtcaggctttggaaagaagagtgaataaaatatgccaagaagaaaaagagaagaggcca
gatctttatgcattggctatgggctactcggggcagttgaaaagtagaaagtcacacatg
atacctgaaaatgaatttcatcacaaggatcctcctccaaggaatgctgttgccagtgta
caaaatgggcctggtggtgggacttcttcatcatccataggaagtgcgtctaaatcagat
gaaagcggtgctgaggagactgataaatcaagggagagatctcagtgtggtacaaaagct
gttaataaggcttctagtaccacaccaaaagggaattcaagcaatggaaatagtggctct
aacagcaacaaagctgttaaggaaaatgacaaagaaaaagtaaaagagaaagaaaaagag
aaaaaagagaagactccagctacaactccagaggccagggtacttggtaaagaaagtaaa
gaaaaaccgaaggaagagcggccaaataaagatgacaaagcaagagagacaaaggaaaga
acacctaaatctgacaaagagaaggagaagttcaagaaggaagaaaaagcaaaagatgag
aaattcaagaccactgtccccagcgtagaatcaaaatcgactcaagaaagggaaagagag
aaggagccatccagagaaagagatgtagcaaaggaaatgaagtcaaaggaaaatgttaaa
ggaggagaaaaaccaccagtttcagggtccttgaagtcacctgttccccgatcagatatc
tcggagcctgacagagaacaaaaacgccgcaaaattgatactcatccttctccatcacat
tcctccactgtaaaggacagtctcatcgatctcaaggactcttcagcaaagctctacatt
aaccataatcctccaccactgtccaagagtaaggagagagaaatggacaagaaagatttg
gacaagtcaagggaaagatccagagaaagagagaaaaaagatgaaaaggacaggaaagag
cggaaaagggatcattcaaacaatgaccgtgaagtgccaccggacataacaaagaggcgg
aaagaggagaatggaacaatgggggtttcaaaacacaaaagtgaaagtccatgtgagtct
caatatccaaatgagaaagacaaagagaaaaataagtcaaaatcttcaggcaaagaaaaa
ggcagtagtgattcgtttaaatctgagaagatggataaaatctcctctggtggcaaaaag
gaatccaggcatgataaagaaaagatagaaaagaaagaaaaacgggatagttcaggagga
aaagaagagaagaaacatcataagtcctctgacaagcacagataa
DBGET
integrated database retrieval system