Rattus norvegicus (rat): 313391
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Entry
313391 CDS
T01003
Symbol
Atg4c
Name
(RefSeq) cysteine protease ATG4C
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04136
Autophagy - other
rno04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
313391 (Atg4c)
04136 Autophagy - other
313391 (Atg4c)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rno01002
]
313391 (Atg4c)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
313391 (Atg4c)
03029 Mitochondrial biogenesis [BR:
rno03029
]
313391 (Atg4c)
Peptidases and inhibitors [BR:
rno01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
313391 (Atg4c)
Membrane trafficking [BR:
rno04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
313391 (Atg4c)
Mitochondrial biogenesis [BR:
rno03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
313391 (Atg4c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
313391
NCBI-ProteinID:
NP_001101418
RGD:
1598323
Ensembl:
ENSRNOG00000008767
UniProt:
A0A8I5ZXZ8
A6JRL6
LinkDB
All DBs
Position
5:118977594..119050894
Genome browser
AA seq
458 aa
AA seq
DB search
MEASGTDEVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDESKVLP
ARSGCAIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEASALTTDCGWGCTLRTGQMLL
AQGLILHFLGRAWTWPDALHIESSDSDSWTSNTIHKFTASFEASLSGERELRTPAVSLKE
TSGKHPDDHAVQSEIYHRQIISWFGDSPVAVFGLHRLIEFGKKSGKKAGDWYGPAVVAHI
LRKAVEEARHPDLQGLTIYVAQDCTVYNSDVIDKQTDSVTAGDARDKAVIILVPVRLGGE
RTNIDYLEFVKGVLSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDF
PLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFERASEEITKMLKISSKEKYPLFTFVN
GHSRDFDFTSTAASEEDLFLEDEKKNFKRFSTEEFVLL
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgtcaggaacagatgaagttgacaagctaaaaactaaatttatatctgcttgg
aacaacatgaaatatagttgggtgttgaaaacaaagacatattttagtagaaactcacct
gttttattgcttggaaaatgttatcattttaaatatgaagatgaaagcaaggtgttgccc
gcaagatcaggatgtgccattgaagatcatgtaattgcaggcaatgtggaagagttccgt
aaggatttcatttctagaatatggctgacctacagggaagaatttcctcaaatagaagct
tcagccttgacgacagactgtggctggggctgtacactgcggaccggccagatgctgctg
gctcagggactcatactacattttctcggtagagcctggacctggcccgacgcactgcac
attgagagttcggactccgactcatggacctccaacaccatccacaagttcactgcgtcc
tttgaagcctccctttcaggggagagagaactccggaccccagcagtctctctgaaggaa
acgtccgggaagcatcccgacgaccatgcagtacagagtgagatttaccacaggcagatc
atctcttggtttggagactcccctgtggctgtctttggcttacatcgcctgatagagttc
gggaagaagtctgggaagaaagctggtgactggtatggaccagcagtggttgctcacatt
ttaagaaaagcagttgaagaagcaaggcatccggatttgcaagggctaacaatttatgtt
gcccaggactgtacagtttacaattctgatgtaattgataagcagactgattctgtgacg
gctggagatgctcgtgacaaggctgttattattttagttcctgttaggcttggtggagaa
agaaccaacattgactatctggagtttgtgaagggtgttttaagccttgagtattgtgtt
ggtatcattggcggcaaaccgaaacagtcatactactttgctggatttcaagatgacagt
ttgatttacatggatcctcattactgccagtcttttgtagatgtcagcataaaggatttc
cctctcgagacattccactgtccatctcctaagaagatgtcatttcgaaaaatggatcct
agttgcacgataggattttactgtcgaaatgtccaggactttgaacgagcatctgaagaa
atcactaagatgttgaaaatttcctctaaggagaaatatccattatttacttttgtaaat
ggccattccagagactttgattttacgtccactgcagccagtgaggaagaccttttctta
gaagatgaaaagaagaatttcaaaagatttagcacagaagagtttgtcctcctttaa
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integrated database retrieval system