Rattus norvegicus (rat): 313449
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Entry
313449 CDS
T01003
Symbol
Upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03013
Nucleocytoplasmic transport
rno03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
313449 (Upf3b)
03015 mRNA surveillance pathway
313449 (Upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
313449 (Upf3b)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
313449 (Upf3b)
mRNA cycle factors
P-body specific factors
313449 (Upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
313449
NCBI-ProteinID:
NP_001129345
RGD:
1560264
Ensembl:
ENSRNOG00000039994
Vega:
OTTRNOG00000002019
UniProt:
D3ZBE8
LinkDB
All DBs
Position
X:complement(121200993..121219059)
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AA seq
472 aa
AA seq
DB search
MKEEKDHRPKEKRVTLLTPQGATGGCIGATAEGAKGDDRQDRNRDKKEALSKVVIRRLPP
TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDILLFRDRFDGYVFL
DNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRKFLESYATDNEKMTSTPET
LLEEIEAKNRELIAKRTTPLLSFLKNKQRMREEKREERRRREIERKRQREEERRKWKEEE
KRKRKDIEKLKKIERIPEREKIRDEPKIKLLRKPEKGDEKELDKRDKTKRLDKENLNEDR
ASGHSYTLPRRSDVELKDEKPKRPDDESVRDYRDRDRDYERDQERMIRERERMKRQEEER
RRQQQKERYEKEKAFKRKEEEMKREKEALRDKGKKSENTESICSLEKIEKKEEVVKRDRI
RNKDRPAMQLYQPGARSRSRLCPADDSIKPGDSPVEKKQESGISHRKEGGEE
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagaaaaagatcataggcctaaggagaaacgagtgaccctgttaacgcctcag
ggcgctacaggcggctgcattggagctaccgcagaaggcgccaaaggggacgataggcaa
gatcgcaacagggacaagaaagaagctttgagcaaggtcgtaattcgaagattacctccc
actctgaccaaggagcagcttcaggaacatcttcaacctatgcctgagcatgattatttt
gagtttttttccaatgatactagtctttatcctcatatgtatgccagagcatatatcaac
tttaaaaaccaagaggacattcttttattcagggaccgatttgatggctatgtattcctt
gacaataaaggtcaggaatatcatgctatagtagaatttgcaccatttcaaaaagctgca
aaaaagaagattaagaaaagagatacaaaagttgggactatcgaggatgatccagaatac
agaaaatttttggagagttatgccacagacaatgagaaaatgacatctactccagagaca
ttgctggaagaaattgaagccaaaaatcgagaattaatagctaaaaggacaaccccactt
ttgagcttcctgaagaacaagcagagaatgagagaagaaaagagagaagagaggaggaga
cgggaaatagagaggaaaagacaaagagaagaagagagaagaaaatggaaagaagaggag
aaacgaaaaagaaaagatatagaaaaactaaagaagatagaaagaattccagaaagggaa
aagataagggatgaaccaaagattaagctgctcaggaaaccagaaaaaggagatgaaaag
gaacttgataaaagagacaaaaccaagagactggacaaagaaaatctgaatgaagacaga
gccagtgggcacagttatactctgcccaggcgttctgatgtcgaactgaaggatgaaaaa
ccaaagaggcctgatgacgagagtgtcagagactacagagatagggaccgggattatgaa
agagatcaggagcgcatgatccgagaaagagagaggatgaagcggcaggaagaagagcgc
cggaggcagcagcagaaggagcgctatgagaaagagaaggcttttaagcgaaaggaagaa
gaaatgaagagagagaaagaagcacttcgagataaaggaaagaagagtgagaatacagaa
tcaatatgctcgttagaaaaaattgaaaaaaaagaggaagtggttaagagagatcgcata
aggaacaaggatcgtccagcaatgcagctttaccaaccaggggctcgaagccgaagtcga
ctctgtcccgccgatgacagcatcaagcctggagattccccagtggagaaaaagcaggaa
agtggtattagccatagaaaagaaggaggagaggagtga
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