Rattus norvegicus (rat): 313717
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Entry
313717 CDS
T01003
Symbol
Clstn1
Name
(RefSeq) calsyntenin-1 precursor
KO
K22659
calsyntenin 1
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rno04515
]
313717 (Clstn1)
Cell adhesion molecules [BR:
rno04515
]
Cadherins
Cadherin related
313717 (Clstn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
Laminin_G_2
CDC45
FAM176
Toxin_R_bind_N
EphA2_TM
V_ATPase_I
UQ_con
Cadherin_C_2
SID-1_RNA_chan
PFF1_TM
Zip
Motif
Other DBs
NCBI-GeneID:
313717
NCBI-ProteinID:
NP_001007093
RGD:
1306458
Ensembl:
ENSRNOG00000016398
UniProt:
Q6Q0N0
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All DBs
Position
5:165314128..165377627
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AA seq
952 aa
AA seq
DB search
MLRRPAPALARAVRLLLAGLLYGGGVWAARVNKHKPWLEPTYHGIVTENDNTVLLDPPLI
ALDKDSPLRFAGEICGFKIHGQNVPFDAVVVDKSTGEGIIRSKEKLDCELQKDYTFTIQA
YDCGKGPDGTGVKKSHKATVHIQVNDVNEYAPVFKEKSYKAAVVEGKQHGSILRVEAVDA
DCSPQFSQICSYEILTPDVPFTVDKDGYIKNTEKLNYGKEHQYKLTVTAYDCGKKRATED
VLVKISVKPTCSPGWQGWSSRIEYEPGTGALAVFPSIHLETCDEPVASVQATVELETSHI
GKGCDRDTYSEKSLHRLCGAAAGTSELLPSPSSSFNWTVGLPTDNGHDSDQVFEFNGTQA
VRIPDGVVTLDPKEPFTISVWMRHGPFGRKKETILCSSDKTDMNRHHYSLYVHGCRLIFL
LRQDPSEEKKYRPAEFHWKLNQVCDEDWHHFVLNVEVPSVTLYVDGVSHEPFSVTEDYPL
HPTKIETQLVVGACWQGGDLHMTQFFRGNLAGLTVRSGKLADKKVIDCLYTCKEGLDLQV
PEDGNRGVQIQTSSSQAVLTLEGENVGELDKAMQHISYLNSRQFPTPGIRRLKITSTVKC
FNEAACIEVPPVEGYVMVLQPEEPKISLSGVHHFARAASEFESPEGVSLFPELKIISTIT
REVEPEADGAEDPTVQESLVSEEIVHDLDTCEVTVEGEELNAEQESLEVDVARLQQKGIE
VNHSDLGVVFTGVETMASYEEVLHLLRYRNWHTRSLLDRKFKLICSELNGRYLSNEFKVE
VNVIHTANPVEHANHMAAQPQFVHPEHRSFVDLSGHNLASPHPFAVVPSTATVVIVVCVS
FLVFMIILGVFRIRAAHQRTMRDQDTGKENEMDWDDSALTITVNPMETYEDQHSSEEEEE
EEEEEESEDGEEEEDITSAESESSEEEEGGPGDGQNTTRQQQLEWDYSTLSY
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgccgccctgcgcccgcgctggcccgggctgtccggctgctgctggcggggctg
ctgtacggcggcggggtctgggccgcgcgagttaacaagcacaagccatggctggagccc
acctaccacgggatcgtcaccgagaacgataacacggtgctgctcgacccccccctcatc
gccctggacaaagactcaccgctgcgctttgcaggtgagatttgtggctttaaaatccac
gggcagaatgtccccttcgatgccgtggtagtggataagtccacgggtgagggaataatc
cgatcaaaagagaaactggactgtgagttgcagaaagactatacattcaccatccaggcc
tacgactgcgggaagggacccgatggcaccggtgtgaaaaaatctcacaaagcaaccgtg
cacatccaggtgaacgacgtgaatgagtacgcccccgtgttcaaggagaagtcgtacaag
gcggccgtggtggagggcaagcagcacggcagcatcctcagggtggaggccgtggatgca
gactgctcgccccagttcagccagatctgcagctatgagattctcaccccagatgtgccg
ttcactgtggacaaagacggttacatcaaaaacacagagaagcttaactacggcaaagag
catcagtataagctcactgtcaccgcctatgactgtgggaagaaaagagccacggaggac
gtcctggtgaagatcagcgttaagcccacctgcagccccgggtggcaaggctggagcagc
agaattgaatatgagcccggcacaggcgctttggccgtcttcccgagcatccacttggag
acctgcgacgagcctgtcgcctctgtgcaggccacagtggagctggagaccagccacata
gggaaaggctgcgaccgagacacctactccgagaagtccctccaccggctctgtggggct
gctgctggtacctcagagctgctcccgtcgcccagtagctccttcaattggaccgtcggc
ctccccactgacaacggccatgacagtgaccaggtctttgagttcaatggcacacaggcg
gtgcggatcccagacggtgttgtgacccttgaccccaaagagccttttacaatttccgtg
tggatgcggcatgggccttttggccggaagaaggagacaattctctgcagttcggataaa
acagatatgaaccgacaccattattcgctctatgtccacgggtgcagactcattttcctc
ctccgtcaggacccgtctgaggagaagaagtacaggcctgcggagttccactggaagctg
aaccaagtctgtgatgaggattggcaccactttgtcctcaatgtggaagtcccaagtgtg
accctctatgtggacggcgtctctcatgagcccttctccgtgaccgaggactacccactt
catccaaccaaaatagaaactcagcttgtggtcggagcttgctggcaaggtggtgacctg
cacatgacgcagtttttccgaggtaacctggctggcctcacagtccgttctgggaaactg
gcagataagaaagtgatcgactgtctgtacacctgcaaagaggggctggacctgcaggtc
cctgaggatggcaacagaggggtgcagatccaaacaagctccagtcaggcggtattgacc
ttggagggggagaatgtcggagagttggataaggccatgcagcacatttcttacctcaac
tcaaggcagttccccacaccaggcatccgcaggctgaaaatcaccagcaccgtcaagtgc
tttaatgaggcggcttgcatcgaggtgcctccggtggagggctacgtgatggttttacag
ccagaagaacccaagatcagcctgagtggggtccaccactttgcccgcgcagcttccgag
tttgagagcccggagggtgtttcccttttccctgagctgaaaatcataagcaccatcacc
agagaggtggagcccgaggcggacggggctgaggaccccacagtgcaagagtccctggtg
tcggaggagattgtgcacgacctggacacctgtgaggtcacggtggaaggggaggagctg
aacgcagagcaggagagcctagaggtggacgtggcccgcctccagcagaagggcatcgaa
gtgaaccactctgacctgggcgtggtcttcacaggtgtggaaaccatggcaagctacgag
gaggttctgcacctcctgcgctatcggaattggcacaccaggtccctgctggaccggaag
ttcaagctcatttgctcggaactaaatggtcgttacctcagcaacgagttcaaggtggag
gtgaatgtgatccacacagccaaccccgtggaacacgctaatcacatggccgcccagcca
cagtttgtccaccctgaacaccgatccttcgtggacctgtctggtcacaacttggccagt
cctcacccatttgcagttgtccccagcacggcgactgtcgtgattgtggtatgtgtcagc
ttcctggttttcatgatcatcctgggggtgtttcggatccgagctgcacatcagcgaacg
atgcgggaccaggacaccgggaaggagaacgagatggactgggatgactctgccttgacc
atcactgtcaaccccatggagacgtacgaggaccagcacagcagtgaggaggaggaagaa
gaggaagaggaggaggagagtgaagacggggaggaggaggaggacatcaccagtgccgag
tcagagagcagtgaggaggaggaaggcggccccggggacggccagaacaccacccggcag
cagcagctagaatgggactactccacactcagctactaa
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