Rattus norvegicus (rat): 315071
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Entry
315071 CDS
T01003
Symbol
Col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
315071 (Col22a1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
315071
NCBI-ProteinID:
XP_038936146
RGD:
1309081
Ensembl:
ENSRNOG00000024824
UniProt:
F1M897
LinkDB
All DBs
Position
7:complement(105619776..105857246)
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AA seq
1613 aa
AA seq
DB search
MPVSKRRRAMAVPRGNPLACLLWILLLCGGYGSCQAQRAGCKSVQYDLVFLLDTSSSVGK
EDFEKVRQWVANLVDTFEVGPGHTRVGVVRYSDRPTTAFELGHFSSREEVKAAARRITYH
GGNTNTGDALRYITSRSFSAQAGGRPGNRAFKQVAILLTDGRSQDLVLDAAAAAHAAGIR
IFAVGVGAALKEELDEIASEPKSAHVFHVSDFNAIDKIRGKLRRRLCENVLCPSVRVEGD
RFKHTNGGTKEITGFDLMDLFSVKEILGKRENGAQSSYVRMGSFPVVQRTEDVFPQGLPD
EYAFVTTFRFRKTSRKEDWYIWQVIDQYGIPQVSIRLDGENKAVEYNAVGAMEDAVRVVF
RGPQVDNLFDRDWHKMALSIQAQNVSLYIDCMLVQTLPIEERENIDIQGKTVIGKRLYDS
VPIDFDLQRIVIYCDSRHAELETCCDIPLGPCQVTVVTEPPPAPPQLPTPGSEQIGFLKT
INCSCPAGEKGERGFAGPVGLPGQKGDAGPIGLMGAPGPKGEKGDTGRGPFIQGGKGEKG
SLGPPGPPGRDGSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPAGQVGAPGLRGERG
EMGPPGEKGERGLDGFPGKPGEIGEQGRPGPPGVAGLQGEKGDVGPAGPPGVPGSVVQRE
GLKGEQGAPGPRGHQGLPGPPGAPGLIGPEGRDGPPGPQGLRGKKGEVGPPGTPGSVGPQ
GPPGPPGVQGPPGPGGPPGLPGELGFPGKPGPAGHVGPPGKDGVNGPPGLPGSKGEPGDP
GESGVPGMPGPRGEVGEQGLAGHPGEKGEVGLPGAPGFPGVRGEKGNQGEKGELGLPGLK
GAQGEKGEVGPAGPPGLPGSPSIFTPHPRMPGEQGPKGEKGDPGEPGALGPQGHPGELGP
RGPTGPPGAKGQDGAQGPPGTAGNPGAPGPAGLPGLSGPPGSVGSPGVRGTPGKDGERGE
KGTAGEAGSPGPAGPRGDPGAPGLPGPPGKGKDGEPGLRGPPGLPGPLGTKGDRGTPGIP
GSPGSRGDPGIGVAGPPGPSGQPGDKGPPGSRGLPGFPGPQGPAGQDGTPGNPGERGPPG
KPGPSSLLSPEDINLLVKDVCNDCPPGPPGLPGLPGFKGDKGLPGKPGREGTEGKKGDTG
PQGLPGPPGVAGPQGSKGEHGAEGEVGQKGDQGHPGVPGFMGPPGNPGPPGADGNAGAAG
LPGPQGPPGKEGPPGPQGPSGIPGIPGEEGKQGRDGKPGPPGEPGKTGEPGLPGAEGVRG
PPGFKGHTGDPGPPGLRGEPGPTGPPGREGSPGKDGDTGPAGPQGPRGTRGPPGSSGSPG
SPGDPGRPGAPGQKGNKGESGSPGLPGFLGPRGPPGEAGEIGAPGKEGAPGKPGEPGSKG
EPGDPGIKGDKGPPGGKGQPGDPGTPGHKGHTGLMGPQGQPGESGPPGPPGPPGQPGFPG
LRGESPSIDTLRRLIQEELGKQLEAKLAYLLAQMPPAHIKSSQGRPGPPGPPGKDGLPGR
TGPMGEPGRPGQGGLEGPSGPMGPKGERGAKGDPGTPGVGLRGEMGPPGIPGQPGEPGYA
KDGLPGSPGPQGETGPAGHPGPPGPPGPPGQCDPSQCAYFASLAARPSNVKGP
NT seq
4842 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtctccaagaggaggagagccatggctgtcccccgagggaatcctttggcctgc
cttctgtggattctgctgctgtgtggagggtatggtagttgccaggcccaacgtgcaggt
tgcaaaagtgtgcagtatgatctggtctttcttctggacacgtcttccagtgtaggcaag
gaggactttgagaaggtccgccaatgggtagccaacctggtagacacctttgaggtgggc
cctggccacacccgtgtgggggttgtgcgctacagtgaccggcccactacagcctttgaa
ctgggccacttcagctcccgtgaggaggtaaaggctgctgcgaggcgcatcacctaccat
ggcggtaacacgaacacaggcgatgcgctgcgttatatcaccagccgcagcttttctgcc
caggcaggtggcaggcctgggaatcgtgccttcaagcaggtggccatcctgttgactgat
ggccgtagccaggacctggtgctggatgctgcagcagctgcccatgcagctggcatccgc
atctttgctgttggtgtgggtgcagcgttaaaggaggagctggatgagatcgcttcagaa
cccaagtctgcacacgtcttccatgtttccgacttcaacgccattgacaagatccgtggc
aagctgaggcgtcggctttgtgaaaatgtgctctgccctagtgtccgggtagaaggagat
cggtttaaacacaccaatggaggaaccaaggagatcacaggttttgacttgatggattta
ttcagtgtgaaggaaatcttggggaagagagaaaacggagcccagagttcctatgtacgg
atgggttccttccctgtggtgcagagaactgaagatgtgttcccccaaggcctgcctgat
gagtatgcctttgtcacaactttccggttccggaaaacatcacggaaagaagattggtac
atctggcaagtcattgaccagtatggcatcccacaggtctctatccggctggatggtgag
aacaaggcagttgagtacaacgctgtgggtgccatggaggatgcagtccgggtggtcttc
cgaggcccccaagttgataacctttttgaccgtgactggcacaagatggctctaagcatc
caggcccagaatgtgtccctctacattgactgtatgctggttcagacgctgcccattgag
gagagggagaacatcgacatccagggcaagactgtgattggcaaacgtctctatgacagc
gtgcccattgattttgacctgcagcggattgtgatttactgtgactcgcgacatgcagaa
ctggagacttgctgtgacatccccttgggtccgtgtcaggtgactgtcgtgacagagccg
ccacctgcgcctccacagctgcccacacctggtagcgaacagattgggttcttgaagacc
atcaactgctcctgcccagctggagaaaagggtgagaggggctttgctggccctgtggga
ctccctggtcagaagggagatgcaggacccattggactaatgggagctcctggacccaag
ggagagaaaggagacactgggagaggacccttcatccagggaggaaagggtgagaaggga
tctctgggcccacctgggccccctggaagagacggcagtaaaggcatgagaggggaacca
ggagagttaggagagccggggctgcctggagaggtgggcatgcgggggccccagggacca
cctggactacctggacctgctgggcaagttggagctccaggtcttcgaggagaacgaggt
gaaatgggacctccaggagaaaagggggagcgaggactggatggattccctgggaagcct
ggagagattggagagcagggaagacctggacctcctggtgtggcaggactgcagggagag
aagggagatgtggggcctgccggaccccctggtgtgccaggctctgtggtgcagagagag
ggcctgaagggagagcagggagcccccggaccaagaggtcaccaaggcctacctgggcct
ccaggagcacctggtttgattggtccagaaggcagagatggacccccagggcctcaaggt
ctccgagggaagaaaggtgaagtgggtccaccaggaacccctggatcagtgggaccacag
ggcccgcctggaccacccggtgttcaagggccccctggaccaggaggtcccccgggttta
cctggtgagctcggcttcccgggaaaacctgggcctgctgggcatgtgggaccacctgga
aaggatggggtgaatgggcctccaggcttgcctggttccaagggagaaccaggggaccct
ggcgaaagtggtgtgcctggaatgcctggacctcggggtgaagttggggagcagggcctt
gcaggtcatcctggtgagaagggagaagttggccttcctggtgctccaggcttcccagga
gtacgtggagagaaaggaaaccagggagaaaaaggtgaactgggacttccgggtctgaaa
ggtgcccaaggagaaaagggtgaggttggtccagcaggccctcctggcttacctggaagt
ccatcaatattcacaccacacccaagaatgccaggagaacaagggcccaaaggagaaaag
ggtgatcctggcgagcctggagccctgggaccacagggccatcctggagaattgggtcct
cggggacccactggacctccgggtgccaaggggcaggatggtgcacaagggcctcctgga
acagctggaaaccctggtgctccaggaccagcaggactgcctggtctcagcggcccccca
ggaagtgtgggttcccctggtgtcagaggcacccctgggaaagacggggagcgtggagag
aagggaacagcaggggaagcaggcagcccggggccagctggtccacggggagatcctggc
gctcctggcctccctgggccaccaggaaaggggaaggatggggagccgggactacgagga
ccacctggattacctggtcccttaggaaccaagggtgaccgaggaacacctgggatccct
ggctctcctggcagccgtggagacccaggcattggggttgctggtccacccggcccctca
ggacaaccaggagataaaggacccccgggatctcgaggcttacctggattccccggccca
caaggaccagctggccaggatggtacaccaggaaatccaggagaaagagggcctcctgga
aaaccaggcccatcttcactgctgtctccagaggacataaatctcttagtaaaggatgtg
tgcaatgattgccctcctggtcccccaggcctcccaggtctgccaggtttcaaaggggac
aagggtcttccaggaaaaccagggagagaagggacagaaggcaaaaagggagatactgga
ccccaaggcctccctgggcctccaggagtagctggaccacagggaagcaaaggagagcat
ggtgcagagggtgaggtgggacagaaaggcgatcagggtcaccctggagttccaggcttc
atgggcccacctgggaatcctgggccaccaggagcagacggaaatgcaggtgcggcagga
ctaccaggacctcaagggcccccgggcaaagaaggccctcctggtccccaaggcccatct
ggcatcccaggaatcccaggtgaagaaggcaaacagggcagagacggaaagccaggtccc
cctggagaaccgggcaaaacaggagaaccaggccttccaggagcagagggagtcagaggt
ccaccgggcttcaagggacatacaggtgatcctggcccacctggtctgaggggagaaccc
ggcccaacaggcccccctggaagggaaggatcaccaggaaaagatggtgacactggacct
gctggaccacagggtcccagaggaacaaggggaccaccgggcagcagtggatcacctgga
tctccaggagaccctggccgtccaggagccccaggccaaaagggaaacaaaggagaaagt
ggcagcccaggacttccagggtttctgggtccccgtgggcctccgggagaagcaggagag
ataggagctccaggaaaggagggtgctcctgggaagcctggagagccaggatccaaagga
gagccgggagaccctgggatcaaaggtgacaaaggaccgccaggtgggaagggccagcct
ggagaccctggaaccccaggccacaagggtcacactggcctaatgggtccccaaggacaa
ccaggggagagtggccctcctgggcccccagggccacctggccagccaggatttccagga
cttcggggtgagtctccatccattgacaccttaaggcgcctcattcaggaagagcttggg
aagcagctagaagccaaacttgcctacctcctggcccagatgcctccagcacacatcaag
tcctctcaaggcagacctgggcccccaggaccccctggaaaagatgggctgccaggccgg
acaggccccatgggtgaaccaggccgccctggccaaggtggtctagaagggccctctgga
ccaatgggccccaaaggtgagagaggagccaaaggtgatcctggcacacctggagttggc
cttcgaggagagatgggtccccctggaataccaggccaacctggagaacctggatatgct
aaagatggacttccaggaagccctggccctcaaggagagacaggaccagctggacatcct
ggccctcctggtccccctggccctcctggccagtgtgacccctcccagtgtgcgtacttt
gccagccttgctgcccggccaagtaatgtgaagggcccctag
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