Rattus norvegicus (rat): 315600
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Entry
315600 CDS
T01003
Symbol
Vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04140
Autophagy - animal
rno04148
Efferocytosis
rno05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
315600 (Vps11)
04148 Efferocytosis
315600 (Vps11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
315600 (Vps11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
315600 (Vps11)
Membrane trafficking [BR:
rno04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
315600 (Vps11)
Hops complex
315600 (Vps11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_C
Clathrin
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3H2C3
zf-RING_UBOX
zf-RING_5
TPR_11
zf-RING_11
DLP_helical
zf-HC5HC2H
zf-C3HC4_3
zf-RING-like
zf-ANAPC11
DUF5847
Motif
Other DBs
NCBI-GeneID:
315600
NCBI-ProteinID:
NP_001101608
RGD:
1308038
Ensembl:
ENSRNOG00000010733
UniProt:
A6J3X6
LinkDB
All DBs
Position
8:complement(53580939..53595378)
Genome browser
AA seq
941 aa
AA seq
DB search
MAAYLQWRRFVFFEKELVKEPLGNDGATPGAAPTSGPTASKFLCLPPGITVCDSGRGSLV
FGDMEGQIWFLPRSLQLTGFQAYKLRVTHLYQLKQHNILASVGEDEEGINPLVKIWNLEK
RDGGNPLCTRILPAIPGTEPTVVSCLTVHENLNFMAIGFTDGSVTLNKGDITRDRHSKTQ
ILHKGSYPVTGLAFRQAGKTTHLFVVTTENVQSYIVSGKDYPRVELDTHGCGLRCSALSD
PSQDLQFIVAGDECVYLYQPDERGPCFAFEGHKLIAHWFRGYLVIVSRDRKVSPKSEFTS
RDSQNSDKQILNIYDLCNKFIAYSAVFEDVVDVLAEWGSLYVLTRDGRVHALQEKDTQTK
LEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSKGNHDGAVQQYIRTIGKLEP
SYVIRKFLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKTKSES
EVHFDVETAIKVLRQAGYYSHALYLAENHAHHEWYLKIQLEDIKNYQEALRYIGKLPFEQ
AESNMKRYGKILMHHIPEQTTQLLKGLCTDYRPSLEGRGDREFPSCRANSEEFIPIFANN
PRELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEKDPQAKEKLHAEAISLLKSGRFC
DVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHEQYRQVIAVCERHGEQEPSLW
EQALSYFARKEEDCKEYVAAVLRHIENKSLMPPLLVVQTLAHNSTATLSIIRDYLVQKLQ
KQSQQIAQDELRVRRYREETTRIRQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGH
SFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDSFSVIAD
YFGRGVFNKLTLLTDPPTARLTPSLEAGLQRDLLMHSRRGT
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctacctgcagtggcggcgattcgttttcttcgagaaggagttggtgaaggaa
ccgctgggtaatgatggggccactcccggggccgcaccgacctcgggacccactgcttcc
aagttcctttgcctccctcctggcattactgtctgcgactcaggccgcgggagcctggtc
tttggagatatggaaggccagatctggttcttgccacgttctctacagcttacagggttc
caggcctacaagctacgggtgacacacttgtatcagctgaagcagcacaatattctggca
tcagttggtgaggatgaagagggcattaaccccctggtaaagatctggaacctggagaag
agagatggtggcaatccactctgcactcggatcctccctgccatcccagggacagagcca
actgtcgtgtcttgtttgaccgtccatgagaatctcaacttcatggccattggcttcacg
gatggcagtgtcactctgaacaagggagatattacccgggacaggcacagcaagacccag
attttgcacaagggcagctatcctgttactggactggcttttcgccaggcaggaaagacc
actcacttgtttgtcgtgacaactgaaaatgttcagtcctacatagtttcaggaaaggac
taccctcgcgtggagttggacacccatggttgtggcctgcgctgttcggccctcagcgac
ccttctcaggacctgcagttcattgtcgctggagatgagtgtgtctacctttaccagccg
gatgaacgcgggccctgctttgcctttgagggccataagctcatcgcccactggtttaga
ggctaccttgtcattgtctcccgtgaccggaaggtttctcccaagtcggagtttaccagc
agggactcacagaactctgacaagcaaattctcaacatctatgacctgtgcaacaagttc
atagcctacagcgctgtttttgaggatgtagtggatgtgctcgctgagtggggctccctg
tacgtgctgaccagggatgggcgggtccacgcattgcaggagaaggacacacagaccaaa
ctggagatgctgtttaagaagaatctctttgagatggcaattaacctggctaagagtcag
catctggacagtgatgggctagctcaaatcttcatgcagtatggagaccatctctacagc
aaaggcaaccatgatggggctgttcagcagtatatccgaaccattgggaagttggagccg
tcctatgtgatccgtaaatttctagatgcccaacgcatccacaacctgactgcctaccta
caaactctgcatcggcaatctctggctaatgccgatcacaccaccctgctcctgaactgc
tataccaagctcaaggacagctcgaagctggaggaattcatcaagacgaagagcgagagt
gaagtccactttgatgtggagacagccatcaaggtcctccggcaggctggctactactcc
catgccctttatctggctgagaaccacgcacatcatgagtggtacttaaagatccagcta
gaggacattaagaactatcaggaagcccttcggtatatcggcaagctgccttttgagcag
gcagagagtaacatgaaacgctatggcaagatcctcatgcaccacataccagagcagaca
acccagttgctgaaaggcctctgtactgactatcggcccagtctggaaggccgaggcgat
cgggagtttccaagctgccgggccaactccgaggagttcatccccatctttgcaaacaac
ccaagagagctgaaagccttcctggagcacatgagcgaagtgcagccagactcaccccag
ggcatctatgacacgctcctggagctacggctgcagaactgggcccatgagaaggatcca
caggccaaggagaaacttcatgcagaggccatctccctgctgaagagtggccgattctgt
gatgtgtttgacaaggcattggtcctgtgccagatgcatgacttccaggatggggtcctt
tacctctatgagcaggggaagctgttccagcagatcatgcattaccacatgcagcacgag
cagtatcggcaggtgattgctgtgtgtgaacgccatggggagcaggagccctccctgtgg
gagcaggccctcagctacttcgcccgcaaggaggaagactgcaaggagtatgtggcagcc
gtgcttagacacatcgagaacaagagcctgatgccacctctcctggtggtacagacgctg
gcacacaactccacagctactctgtccatcatccgagattacctggtccaaaaactgcag
aaacagagccagcagattgcacaggatgagcttcgggtgcggcggtacagagaggagacc
actcgcatccgccaggaaatccaagagctcaaggcgagtccaaagattttccagaagacc
aagtgcagcatctgtaacagtgccttggagctgccttcagtccacttcctgtgtggccac
tccttccaccaacactgctttgagagctactcagaaagtgatgctgactgccccacctgc
ctccctgagaatcggaaggtgatggatatgatccgggcccaggaacagaaacgagatctc
catgatcaattccagcatcagctcaagtgctcgaatgacagcttctccgtgattgcggac
tactttggccgaggggttttcaacaagctgactctgctgaccgatccccctacagccaga
ctgacccccagcctggaggctgggctacagcgggacctgctgatgcactccaggagggga
acgtaa
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integrated database retrieval system