Rattus norvegicus (rat): 315708
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Entry
315708 CDS
T01003
Symbol
Edc3
Name
(RefSeq) enhancer of mRNA-decapping protein 3
KO
K12615
enhancer of mRNA-decapping protein 3
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
315708 (Edc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
315708 (Edc3)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
315708 (Edc3)
mRNA degradation factors
5'-3' decay
Decapping complex
315708 (Edc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Edc3_linker
FDF
YjeF_N
LSM14
DUF5096
Motif
Other DBs
NCBI-GeneID:
315708
NCBI-ProteinID:
NP_001386245
RGD:
1306898
Ensembl:
ENSRNOG00000019579
LinkDB
All DBs
Position
8:67002032..67047563
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AA seq
506 aa
AA seq
DB search
MDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPFHNGVKCLVPEVTFRAGDITEL
KILEIPGPGDNQQFGDLHQTELGPSGVGYQMSINQNGTGKVVKKPASSSSAPQSIPKRTD
MKSQDVAISPQQQQCSKSYVDRHMESLSQSKSFRRRHNSWSSSSRHPNQATPKKSGLKNG
QMKNKDDECFGDDIEEIPDTDFDFEGNLALFDKAAVFEEIDTYERRSGSRSRGVPNERPA
RYRHDENILESEPIVYRRITVPHSVSKEFCTDSGLVVPSVSYELHKKLLSVAEKHGLTLE
RRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANHDV
QVILFLPNFVKMLESITNELSLFSKTQGQQVSSLRDLPTSPVDLVINCLDCPENAFLRDQ
PWYKAAVAWANQNRAPVLSIDPPVHEVEQGIDAKWSLALGLPLPLGEHAGRVYLCDIGIP
QQVFQEVGIDYHSPFGCKFVIPLHSA
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggattggctaggcagtattgtgtctatcaactgtggagatagcctgggcgtctaccag
ggaagagtatcagcagtggatcaggtcagccagaccatttctcttactcggcccttccat
aatggggtgaagtgtcttgtaccagaagtcaccttccgggcaggtgatattacagaatta
aaaatcttggagataccaggtcctggagacaaccagcagtttggagaccttcatcagaca
gaattaggcccttctggtgttgggtaccaaatgagtatcaatcagaatggaacaggcaag
gtggtcaagaagccagcctcttccagtagtgcccctcagagcatccctaagaggacagat
atgaagagccaggacgttgccatttctcctcagcagcagcagtgctcaaagagttatgtg
gacaggcacatggagtctttgagtcagtccaagagcttccgtcgtcggcacaactcctgg
tcatctagtagcaggcacccaaaccaagcaaccccaaagaaaagtggtttaaaaaatggc
caaatgaagaataaagatgatgagtgctttggagacgacattgaggagatcccagatact
gattttgactttgaggggaacctagccctttttgacaaggcagctgtgtttgaggagatc
gacacttacgagaggagaagtggttcccgttctcggggtgtcccaaatgaacggcccgct
aggtaccgtcatgatgaaaacatcctggaatcggagccaatcgtgtaccgtaggatcaca
gttccacacagtgtgagcaaggagttctgcacagactctggcctggtagtcccaagtgtt
tcctatgagctacataaaaaactgttgtctgtggccgagaagcatgggctgaccctagag
cggagacttgagatgactggtgtgtgtgccagtcagatggccctgactctccttggagga
cccaacaggttgaatcctaagaatgtccaccagaggcctacagtagctctgctgtgcggg
ccccatgtgaagggggctcagggtatcagttgtgggaggcacctagccaaccatgatgta
caagtcatcctctttctgcccaactttgtcaagatgctggagtctattaccaatgaactg
tctctcttcagcaagacccaaggtcagcaagtgtccagcctaagagatctccccaccagc
cctgtggacctggttatcaactgcctggattgtcctgagaatgccttcctgcgggatcag
ccctggtacaaggcagctgtggcctgggccaaccagaaccgggcaccagtgctcagcata
gaccctcctgtacatgaagttgaacagggcattgatgccaaatggtccctggccctgggc
ctgccgctgccgctcggggagcacgcaggtcgagtctatctgtgtgacattggcattccc
cagcaagtcttccaggaggtcggcattgactaccactcaccctttggctgcaagtttgtc
attcccctacactctgcctag
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