Rattus norvegicus (rat): 315979
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Entry
315979 CDS
T01003
Symbol
Col6a6
Name
(RefSeq) collagen alpha-6(VI) chain isoform X3
KO
K06238
collagen type VI alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04151
PI3K-Akt signaling pathway
rno04510
Focal adhesion
rno04512
ECM-receptor interaction
rno04518
Integrin signaling
rno04820
Cytoskeleton in muscle cells
rno04974
Protein digestion and absorption
rno05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
315979 (Col6a6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
315979 (Col6a6)
04518 Integrin signaling
315979 (Col6a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
315979 (Col6a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
315979 (Col6a6)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
315979 (Col6a6)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
315979 (Col6a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rno04147
]
315979 (Col6a6)
00536 Glycosaminoglycan binding proteins [BR:
rno00536
]
315979 (Col6a6)
Exosome [BR:
rno04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
315979 (Col6a6)
Glycosaminoglycan binding proteins [BR:
rno00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
315979 (Col6a6)
Hyaluronan
Extracellular matrix or blood plasma proteins
315979 (Col6a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
vWA_SIBA-E
Integrin_beta
Motif
Other DBs
NCBI-GeneID:
315979
NCBI-ProteinID:
XP_038938537
RGD:
1309172
Ensembl:
ENSRNOG00000023007
UniProt:
D3ZL10
LinkDB
All DBs
Position
8:complement(115196833..115352161)
Genome browser
AA seq
2264 aa
AA seq
DB search
MLLILFLMMICLHVCANQDSGPEYADVVFLVDSSDHLGMKSFPLVKTFIQKLVSSLPVEA
NKYRVALAQYSDALHNEFHLGAFKNRNPMLNHLKKNFGFIGGSLKIGNALQEAHRTYFSA
PTNGRDKKQFPPILVVLASAESEDDVEEASKALREDGVKIISVGVQKASEEDLKAMATSQ
FHFNLRTARDLSMFAPNMTQIIKDVTQYREAMTDDIIVEACQGPSVADVVFLLDMAINGS
QENLDHLKAFLGESVSALDIKENCMRVGLVAYSNETRVISSLSMGVNKTEVLQRIQDLSP
HVGQAYTGAALRKTRKEVFSAQRGSRKNQGVPQIAVLVTHRASDDNVTKAAVNLRREGVT
VFTMGVEGANPEQLEKIASYPAEQFTSKLSNFSELATHNQTFLKKLRNQITHTVSVFSER
TETLKSACVDTEEADIYLLIDGSGNTQPTDFHEMKIFLSEVVDMFNIAPHKVRVGAVQYA
DTWDLEFEISKYTNKPDLGKAIDNIRQMGGNTNTGAALNFTLTLLQRAKKQRGNKVPCHL
VVLTNGMSQDSVLGPAHKLREENIRVHAIGVKEANQTQLREIAGDEKRVYYVHEFDALRD
IRNQVVQEICAEEACRDMKADIMFLVDSSGSIGLENFSKMKVFMKNLVSKSQIGADRVQI
GVVQFSHENREEFQLNTFMSQNDIANAIDQMAHIGETTLTGSALTFVSQYFSPEKGARPN
VRKFLILITDGEAQDIVKDPAVALRKDGVIIYSVGVFGSNVTQLEEISGKPEMVFYVENF
DILQHIEDDLVLGICSPREECKRIEVLDVVFVIDSSGSIDYQEYNIMKDFMIGLVKKADV
GKNQVRFGALKYADDPEVLFYLDELGTKLEVISVLQNDQPMGGNTYTAEALAFSDHMFTE
ARGSRLHKGVPQVLIVITDGESHDAEKLNATAKALRDKGILVLAVGIAGANTWELLAMAG
SSDKYYFVETFGGLKGIFSDVSASVCNSSKVDCEIEKVDLVFLMDGSNSIHPDDFQKMKE
FLASVVQDFDVSLNRVRIGVAQFSDSYRSEFLLGTFTGEKEISTQIEAIQQIFGYTHIGD
ALRKVKHYFRPDTGSRINAGTPQVLLVLTDGRSQDEVAQAAEELRHKGVDIYSVGIGDVD
DQQLIQITGTAEKKLTVHNFDELKKVKKRIVRNICTSGGESNCFVDVVVGFDISSQRRGQ
TLLEGQPWMGTYLQDLLRAISSLNGVSCEVGTETQVSIAFQVTNAMERYPSKFEIYSENI
LSSLQGVTVNGPSRLNPNLLSSLWDTFQNKSAARGKVVLLFSDGLDDGVEKLEQKSDELR
KEGLNALITIAVDGAADSSDLADLLYIEFGKGFEYRTQFTIGMGNLGSHLSKQLINVAER
TCCCLLCKCTGWDGAMGDPGSAGEKGPPGFKGSEGYLGEEGIAGERGALGPMGEQGTKGC
LGAKGPKGARGLSGEEGEVGEDGLDGLNGEQGDSGIPGRRGERGDAGSQGSPGKRGASGD
RGPKGLRGDPGTPGRDNSIQGPKGLKGDPGRQGRRGWPGSPGTPGSRRKMVVHGRRGHTG
PQGNPGITGPDGLEGSPGLKGPQGPRGEVGEKGEKGGFGMKGPQGPPGPKGRAGNQGHWG
SQGSKGEPGDLGEKGAAGFPGPRGLQGDDGSPGYGSIGRKGTKGQEGFPGESGPKGDIGD
PGDPGEAGPKGARGKTVSAGIPGEPGSPGEPGPPGRKGMKGARGLASFSTCDLIQYVREH
SPVRHGKPECPVHPTELVFVLDQSRDVTEQDFERMKGMMASLVRDIKVRDASCPVGARVA
ILAYNSHTRHLIRFSDAYRKDQLLREIKALPYEKSSDSREIGKAMRFISRNVFKRTLPGA
HVRRIATFFSSGQSADVQSITTAAMEFSALDIIPVVIAFSNVPSVKRAFSIDDTGTFQVL
VVPSRPDQVPALERLQRCTFCYDLCKPDASCDQAKPPIQSYLDAAFLLDSSWHVGGAEFE
DMRDLLEALLDHFEIASEPETSVTGDRVALLSHAPVDFLPNTQRSPVRTEFNLTTYSSKH
LMKRHVEQAVQQLNGDAFLGHALRWALDNVFLNTPNLRRNKVIFVISAGETSHLDAETLK
KESLRAKCHGYALFVFSLGPDWDDKELEDLASHPLDQHLIQLGRIHKPDHGYGVKFVKSF
INSIRHGINKYPPVNFKAKCSRLSSAAPKLSPRQFRSFVPGPQKALLKDHTLEAAKLFQD
KKRLSSILRSGRAALSSHSRSTRYSFKQGREATKATSKLGKRSD
NT seq
6795 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgattttgttcctgatgatgatttgtttacacgtttgtgcgaaccaagattct
ggccccgagtacgcagatgtggtttttctggtggacagttccgatcacctagggatgaag
tcctttcctcttgtgaaaactttcatccaaaagctagtcagcagcctccccgtagaggcc
aacaagtaccgtgtggccctggcccagtacagtgatgctctccacaatgagttccaccta
ggcgccttcaagaacaggaaccccatgctgaaccacctcaagaagaacttcgggttcatc
ggcggctccctgaagattgggaacgccctgcaggaggctcacaggacctatttctctgct
cccacaaacggaagagacaagaaacagttccccccaatcctggtggtgctggcttcagcg
gagtccgaggatgacgtagaagaggcttcgaaggccctgcgggaagatggggtgaaaatc
atctctgtgggggtgcagaaggcttctgaggaagacctgaaggccatggccacctctcag
tttcatttcaacctcaggactgccagagacctcagcatgtttgccccaaacatgacacag
atcatcaaggatgtgactcagtacagggaagcaatgactgatgacattattgtagaagct
tgccaaggcccatctgtggccgatgtggtattcctgttggatatggccatcaacggcagc
caagagaacctagatcatcttaaagcattcctgggggaaagtgtctctgcccttgacata
aaggaaaactgcatgagggttggcctggtggcctatagcaacgaaacaagggtgatcagt
tctctgagcatgggtgtcaacaagacggaggtcttacagcgcatacaggatctgtcccct
cacgtagggcaggcctacacaggagctgccctcagaaagacgaggaaggaagtcttcagt
gcacagaggggcagtcggaagaaccaaggggtgcctcagattgctgtgctggtgacccac
agagcttcagatgacaacgtgaccaaggcagctgtcaacctccggcgggagggagtgacc
gtctttaccatgggcgtagagggggctaacccagaacagctggagaagatcgcatcctac
cctgccgagcagttcacctccaaactgagcaacttctctgagctggccacccacaaccag
acgttcctgaagaagctgaggaaccaaatcacacacacagtctctgtcttctcagaacgg
actgagaccctcaaatcagcctgtgtggacacagaggaagcggatatctatctgctcatt
gatggttcagggaacacgcagcccacagacttccatgagatgaagatcttcctgtccgag
gtggtggacatgttcaacatcgctccccacaaggtgcgagtcggggccgtgcagtacgcc
gacacctgggacctggaatttgagatctctaagtatactaacaagcctgacttgggaaag
gccatcgacaacatcaggcagatgggtggaaacaccaatacgggtgcagccctgaacttc
accctgacgctgttgcaaagagcaaagaagcaacggggaaacaaagtgccatgtcacctg
gttgtcctgacaaacggcatgtcccaggacagcgtcctgggtcccgcgcataagctgagg
gaggaaaacatccgtgtgcatgcgatcggcgtcaaggaagccaaccaaacacagctgcgg
gagatagcgggagatgaaaagcgagtttattacgtgcatgaattcgatgccttgagggac
ataaggaaccaagtggttcaggagatctgtgctgaagaagcctgcagagatatgaaagcg
gacatcatgtttctggtggacagctctggcagcattggactcgaaaacttcagcaagatg
aaggtgtttatgaagaacctggtgagcaaatcccagatcggggctgaccgggtgcaaatt
ggtgtggtccagttcagccacgaaaacagggaggagtttcagctcaacacattcatgtct
caaaatgacattgccaacgccatcgaccaaatggctcacattggagagacaaccttgaca
ggcagtgcgctgacctttgtgtctcagtacttcagtcctgaaaagggggcccggcccaat
gttaggaagttcctcattctcatcacggatggcgaggctcaggacatagtaaaggaccca
gcagtagcccttcgaaaagacggtgtgattatctattctgtgggagtgttcggctccaat
gtcacccagctcgaggagatcagtgggaagccggagatggttttctatgttgagaatttt
gacatcctacagcatattgaagatgatctcgttctgggaatctgcagtccccgtgaagaa
tgcaagcggattgaagttttggatgtagtgtttgtcatcgacagctccggcagcattgac
tatcaagaatataacatcatgaaggacttcatgattggcttggtgaaaaaagctgacgtg
ggcaagaatcaggtccggtttggagctctgaaatatgctgatgacccagaggtgctgttt
tacctggatgaactgggcacaaagctggaggtgatttcagtgctccagaatgaccagccc
atgggtggtaacacttacactgctgaggccctggctttctccgatcacatgttcaccgaa
gcccggggcagccgtctgcacaagggagtcccccaagtcctcattgtgattactgatgga
gaatctcatgatgcagagaagctcaatgccaccgccaaggccctgagggacaaaggcatt
ctggtcctagctgtggggattgctggcgccaatacctgggagctcttggccatggctggg
tcgagtgacaagtactactttgtagagaccttcggaggcctgaaggggatattttccgat
gtgtcagccagtgtctgtaactcttcaaaagtcgattgcgaaattgaaaaagttgacctc
gtattcctcatggatggttcaaacagcatccatccggatgacttccagaagatgaaggag
tttttggcatcggtcgttcaagacttcgatgtcagcctcaacagagtccgcataggagtg
gcacagttcagcgacagctacaggtcagagtttctgctggggacattcacaggggaaaag
gagatatccacacagattgaggccatccagcagatctttggttacacccacattggagat
gcactcaggaaggtgaagcattactttcggccagacacgggcagcaggatcaacgccggt
acccctcaggtgctgctggtcctcacagatggccggtcccaagatgaggtggcccaggcg
gctgaggagctgagacacaagggtgtggacatctactcggtgggcatcggggacgtggat
gaccagcagctgatccagataaccgggacagcggagaaaaaactgacggtgcataacttc
gacgagctaaaaaaggtgaagaaaaggatcgttcgtaacatctgtacctcaggtggtgag
agcaattgtttcgtggatgtggtggttggatttgatatctcaagtcagcggagagggcag
actttgctcgaaggtcagccttggatggggacctacctccaagacctcttacgtgccatc
agctccctcaatggggtaagctgtgaggtgggcacagagactcaggtgagcatagctttt
caagtgacgaatgctatggagagatacccttccaagtttgagatctacagtgagaacata
ctgagcagcctgcagggtgtgacagtgaacggcccatctcgcctcaacccaaacctgctg
agttctctgtgggatacgtttcagaacaagtccgctgctcgagggaaggtggtccttctg
ttttcagatggattggatgacggcgttgaaaaacttgaacagaaatctgatgaactcaga
aaggaaggcctgaatgccctcataaccatcgctgtggacggagctgccgattccagtgac
ctggctgaccttctctacattgaatttgggaaaggatttgagtacagaacacagttcaca
atcggaatggggaaccttgggagtcacctgtcaaagcaactaatcaatgttgcagagagg
acctgctgctgtttgctctgcaagtgcacaggatgggacggcgccatgggggatccgggc
tcagcaggggaaaagggacccccaggatttaaaggcagtgaaggctacctgggagaagaa
ggcattgctggagaaagaggagccttgggaccaatgggagagcaaggtacaaagggatgc
ttaggtgccaaagggcccaagggagcccgaggactcagcggagaagagggtgaagttggg
gaagatgggcttgacggattaaatggagaacagggtgacagtgggattcctggaagaaga
ggagaaaggggtgatgcgggatctcagggaagcccaggcaagagaggggcttctggtgac
cgtggaccgaagggcctacgaggagatccgggaactcctggacgtgataatagcatacag
ggacccaagggcttgaaaggagaccctggaagacaaggcagaagaggctggccaggctct
cctgggacaccaggctcaagaagaaagatggtagttcatggccgaagaggacatacaggc
ccacagggaaatccaggcatcacaggcccagatggacttgaaggttcgcccggacttaag
ggcccgcagggtccaagaggagaggtcggtgagaaaggagaaaaaggaggcttcggaatg
aaaggtccccaggggcctccaggacccaaaggacgagctgggaaccaaggccattgggga
agccaaggaagcaaaggagaacctggagacctgggggaaaagggagctgctggctttcca
gggcctcggggcctgcagggtgacgacggcagcccaggatatggtagcattggccgaaaa
gggacaaaggggcaagaaggattccccggagagagtggaccaaagggtgatattggggac
cctggcgatccaggagaggctggtcccaagggagccagaggcaaaacggtatctgctggg
attccaggagagccaggatcccccggggagccaggaccccctggaaggaagggcatgaaa
ggagcccgaggactggcttcattttccacatgtgacctcattcagtatgtgcgggaacac
agtcctgtcagacacggaaaacctgagtgcccagtgcatccaactgagttggtgtttgtc
ctggaccagtcccgggatgtcacagaacaggactttgagcggatgaaggggatgatggcc
tccttagttagggacatcaaagttagggatgccagctgccccgtgggtgcccgcgttgcc
atcctagcctacaactcccacaccaggcacctcatccgcttctcggatgcctacaggaag
gaccagctgctcagggaaattaaagctcttccttacgagaaatcctccgacagcagggag
attggcaaagccatgaggtttatctccaggaatgtcttcaagagaaccctcccaggggct
cacgtgagaagaatcgccacgttctttagcagtggccagtcagccgatgtccagtccatt
accacagctgccatggagttcagtgccctggacatcataccagtggtgattgcattcagc
aacgtgccctcggtcaagcgtgccttttcgattgatgacactggtacattccaagtcctt
gtggttccctccaggcctgaccaagtgccagcgttagagagactccagcggtgcactttc
tgctatgacctatgcaagccagatgcttcttgtgaccaagccaaaccccccattcagtcc
tacctggatgctgcattcctgctggatagctcctggcatgtgggaggtgcagaatttgaa
gacatgagagacctcctggaggccctgctagatcactttgaaatcgcttcagagccagag
acgtctgtcactggagacagggtggccctactgagtcatgctcccgttgacttcctaccc
aacacccagaggagtcccgttagaactgagttcaacctaaccacctatagcagtaagcac
ctcatgaagagacacgtggagcaagcagtccagcagctgaatggagatgctttccttggt
catgccctcaggtgggcactggacaatgtctttctaaacacgcccaatctgagaaggaac
aaagtcatatttgtgatatctgctggggaaaccagccacctggatgcggaaaccttaaag
aaagagtccctgcgagccaaatgtcatgggtatgccctctttgtgttttccttgggccct
gactgggatgacaaagaactggaagacctggccagccacccacttgaccagcacttgatc
cagcttggccgaattcataaacctgaccacggatatggtgtaaagtttgtgaagtccttt
ataaactccatcaggcatgggataaacaagtatccaccggtcaactttaaagccaagtgc
agcagactcagctcggcggctccgaagctgtccccacgccagtttcgaagctttgttccg
gggccacagaaagctctcctcaaagaccacacactggaggcagcaaagctctttcaagat
aaaaaacgcctttcaagtatcctgagaagtggcagggctgctctttcaagtcattccaga
agcacacgctactcctttaaacaggggagagaagcgacaaaagctacttctaaactcggt
aaacgaagtgactga
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integrated database retrieval system
