Rattus norvegicus (rat): 316640
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Entry
316640 CDS
T01003
Symbol
Atg4b
Name
(RefSeq) cysteine protease ATG4B
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04136
Autophagy - other
rno04140
Autophagy - animal
rno04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
316640 (Atg4b)
04140 Autophagy - animal
316640 (Atg4b)
04136 Autophagy - other
316640 (Atg4b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rno01002
]
316640 (Atg4b)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
316640 (Atg4b)
03029 Mitochondrial biogenesis [BR:
rno03029
]
316640 (Atg4b)
Peptidases and inhibitors [BR:
rno01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
316640 (Atg4b)
Membrane trafficking [BR:
rno04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
316640 (Atg4b)
Mitochondrial biogenesis [BR:
rno03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
316640 (Atg4b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
316640
NCBI-ProteinID:
NP_001386126
RGD:
1309664
Ensembl:
ENSRNOG00000018403
UniProt:
A0A0G2QC33
LinkDB
All DBs
Position
9:101729772..101761456
Genome browser
AA seq
393 aa
AA seq
DB search
MDAATLTYDTLRFAEFEDFPETSEPVWILGRKYSIFTEKDEILSDVASRLWFTYRRNFPA
IGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYFSVLNAFLDRKD
SYYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIR
RLCRASLPCAGAAALSMESERHCNGLPAGAEVTNRPLAWRPLVLLIPLRLGLTDINEAYV
ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPDESFH
CQHPPCRMGIGELDPSIAVGFFCKTEEDFNDWCQQVKKLSQLGGALPMFELVEQQPSHLA
CQDVLNLSLDSSDVERLERFFDSEDEDFEILSL
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggacgcagccactttgacatatgatactctccggtttgccgaatttgaagatttcccc
gagacctcagagcctgtttggattctgggcagaaaatacagcattttcacagagaaggat
gagatcttgtctgatgttgcatccagactttggtttacgtacaggagaaactttccagct
attgggggaactggccctacctcagacacaggctggggttgcatgcttcggtgtggacag
atgatctttgcccaggccctggtgtgccggcacttaggtcgagattggagatggactcag
cggaagagacagcctgacagctacttcagtgtcctcaacgctttcctcgacaggaaggac
agctactattccatccaccagatagcgcaaatgggagttggcgaaggcaagtctataggc
cagtggtacgggccgaacactgttgcccaggtcctcaagaaactggctgtattcgacaca
tggagctccctggctgttcacatagcaatggacaacactgtggtgatggaggaaatcaga
agattgtgcagggccagccttccctgtgccggggccgctgcactatccatggagtcagag
aggcactgtaacgggctccctgctggagctgaagtcaccaacaggcccttggcctggaga
ccattagtgcttctcatccctcttcgcctgggactgacagacatcaatgaggcctatgtg
gagacgctgaagcactgtttcatgatgccccagtccctgggtgttattggagggaagccc
aacagtgcccactactttattggctacgttggtgaggagctcatctatctggatccccat
actacacagcctgcagtggagctgacagacagctgctttatccccgacgagagcttccac
tgccaacaccctccctgtcggatgggcattggggagcttgacccatccattgccgtgggg
tttttctgtaagaccgaggaagactttaatgactggtgccagcaagtcaaaaagctgtcc
cagcttggaggtgccctgcccatgtttgagttggtggaacagcagccttcccatctggcc
tgccaggatgtcctgaacctgtccctagattcttctgatgtagagagactggagaggttc
tttgactctgaggatgaagactttgaaatcttatccctctga
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