Rattus norvegicus (rat): 317335
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Entry
317335 CDS
T01003
Symbol
Ddx3x
Name
(RefSeq) ATP-dependent RNA helicase DDX3X isoform 1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04622
RIG-I-like receptor signaling pathway
rno05161
Hepatitis B
rno05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
317335 (Ddx3x)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
317335 (Ddx3x)
09172 Infectious disease: viral
05161 Hepatitis B
317335 (Ddx3x)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
317335 (Ddx3x)
03041 Spliceosome [BR:
rno03041
]
317335 (Ddx3x)
03036 Chromosome and associated proteins [BR:
rno03036
]
317335 (Ddx3x)
Enzymes [BR:
rno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
317335 (Ddx3x)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
317335 (Ddx3x)
mRNA cycle factors
Common to processing body (P body) and stress granule
317335 (Ddx3x)
Spliceosome [BR:
rno03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
317335 (Ddx3x)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
317335 (Ddx3x)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
317335
NCBI-ProteinID:
NP_001385680
RGD:
1564771
Ensembl:
ENSRNOG00000023383
UniProt:
D4ADE8
LinkDB
All DBs
Position
X:complement(12152346..12165983)
Genome browser
AA seq
661 aa
AA seq
DB search
MSHVAVENALGLDQQFAGLDLNSSDNQTGGSTASRRYIPPHLRNREATKGFYDKDSSGWS
SSKDKDAYSSFGSRGDSRGKSSFFGDRGSGSRGRFDDRGRGDYDGIGGRGDRSGFGKFER
GGNSRWCDKSDEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGNNCPPHIES
FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ
IYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY
GGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI
RRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVW
VEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE
EALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA
TSFFNERNINITKDLLDLLVEAKQEVPSWLENMAFEHHYKGSSRGRSKSSRFSGGFGARD
YRQSSGASSSSFSSSRASSSRSGGGGHGSSRGFGGGGYGGFYNSDGYGGNYNSQGVDWWG
N
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggcagtggaaaatgcgctcgggctggaccagcagtttgctggcctagac
ctgaactcttcagataatcagactggaggaagtacagcaagcaggcgctatatccctcct
catttaaggaacagagaagctactaaaggattctatgacaaagacagttcagggtggagt
tctagtaaagataaagatgcatacagcagctttggatcccggggtgactcacgagggaag
tctagcttctttggtgatcgtggaagtggatcaaggggaaggtttgatgatcgtggacgg
ggagactatgatggcattggtggccgtggagataggagtggctttggcaaatttgaaaga
ggtggaaatagtcgctggtgtgataaatcagatgaagatgactggtcaaagccactccca
ccaagtgaacgcttggaacaggaactcttttctggaggcaatactgggattaactttgag
aaatatgatgacattccagttgaagcaacaggcaacaactgtcctccacatattgaaagt
ttcagtgatgttgagatgggagaaattattatgggaaacattgagcttactcgttatact
cgtccaactccagtgcagaagcatgctattcctattatcaaagagaaaagagacttgatg
gcttgtgctcaaacaggctctggaaaaactgcagcatttctcttgcccatcttgagtcag
atttatgctgatggtcccggagaggctctgagggccatgaaggaaaatggaagatatggg
cgtcgtaaacagtatccaatctccttggtactggcaccaacgagagaattggcagtgcag
atctatgaggaagccagaaaattctcataccggtctagagtccgtccttgcgtggtttat
ggtggtgctgaaattggtcagcagattcgagacttagaacgtggatgccacttgttagta
gccactccaggacgtctagtggacatgatggagagagggaagatcgggctagacttctgc
aaatacctggtgttagatgaagctgaccggatgttagatatggggtttgaacctcagata
cgtagaatagttgaacaagacactatgcctccaaaaggtgtccgccacactatgatgttt
agtgctacttttcctaaggaaatacagatgctggcccgtgatttcttagatgagtacata
tttctggctgtaggaagagttgggtctacttcagagaacatcacacaaaaagtggtttgg
gtggaggagatagacaaaagatcatttctgcttgacctcctaaatgcaacaggcaaggat
tccctgactctagtgtttgtggagaccaaaaagggtgcagattcgctggaggatttctta
taccatgaaggatatgcctgtaccagtatccatggagaccgttctcagagagatagggaa
gaggcccttcaccagttccgctcaggaaaaagcccaattctagtagctacagcagtagca
gcaagaggactggatatttcaaatgtgaagcatgttattaattttgacctgcctagtgat
atcgaagaatatgtgcatcgcataggccgtacagggcgtgtaggaaaccttggtcttgcc
acctcattctttaatgaaagaaatataaatattactaaggatttactggatcttcttgtt
gaagcaaaacaagaagtgccatcttggttggaaaacatggcttttgaacaccactataag
ggtagcagccgtggacgttctaagagcagtcgatttagtggagggtttggtgccagagac
tatcgacagagtagcggcgccagcagttccagcttcagcagcagccgcgcaagcagcagc
cggagtggtggaggtggccatggcagcagcagaggatttggtggaggtggctatggaggc
ttttacaacagtgatggatacggaggaaattacaactcccagggggttgactggtgggga
aactga
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