Rattus norvegicus (rat): 361243
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Entry
361243 CDS
T01003
Symbol
Cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform 1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rno03016
]
361243 (Cdkal1)
Enzymes [BR:
rno01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
361243 (Cdkal1)
Transfer RNA biogenesis [BR:
rno03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
361243 (Cdkal1)
Prokaryotic type
Methylthiotransferases
361243 (Cdkal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
361243
NCBI-ProteinID:
NP_001389100
RGD:
1310246
Ensembl:
ENSRNOG00000018381
UniProt:
F1LV76
A6J7N5
LinkDB
All DBs
Position
17:34927221..35479827
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AA seq
578 aa
AA seq
DB search
MPSASCDVLLDDIEDIISQEDSKPQDRHFSRKHVFPKVRRRNTQKYLQEEPSPPSDSTIP
GIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRN
SIKKAHEENKKVVLAGCVPQAQPRQDYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQ
KKESGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVER
AKQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEVIPEGAMLRLGMTNPPYILEH
LEEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATD
IICGFPGETDQDFQETVKLVEEYKFPSLFINQFYPRPGTPAAKAKQVPAHVKKQRTKDLS
RVFHSYNPYDHKIGERQQVLVTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVDIYE
SGKHFLKGQPVSETRVYTPSICKPLAKGEVSGLTTEFRNRLGDRLNSTSGTCPAPPQGSA
CSRMALQTSQYDCALKVAAGLALIALLLHFWPESMFTM
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgccttctgcatcctgtgatgtactgctggatgacatagaagatatcatatcacaggaa
gattcaaagccacaagatagacatttctcaagaaagcatgtgtttcctaaagtacggagg
cggaatacccaaaaatatttgcaagaagagcccagcccaccaagtgacagcacgattcca
ggcatacagaaaatttggatacgaacatggggctgctcacataataattcagatggagaa
tacatggctggacagcttgctgcctatggctataaaattacagaaaatgcatcagatgca
gatctgtggctcctgaacagctgcactgtgaagaacccagctgaagaccacttcagaaac
tcaatcaaaaaagctcacgaggagaataagaaagttgtcctcgctggctgtgttccccaa
gcccagcctcgtcaggattacctcaaaggactgagcatcattggggttcagcagatagat
cgtgtggtagaagttgtggaggaaacaataaaaggtcactccgtgaggctcctgggccag
aagaaagaaagtgggaagcggttgggtggagcgagactggatttgccaaagatcaggaag
aatccgctgatagaaatcatatccatcaacacggggtgtctcaatgcttgtacctactgc
aaaactaaacatgccagaggaaacctggccagctatcccattgatgaacttgtagagaga
gccaagcagtcctttcaagagggtgtttgtgagatatggctgaccagcgaggacaccggg
gcctatggcagagacattggcacagatctccccacactcctgtggaagctggtggaagtg
attcctgagggagccatgctgaggcttggcatgacaaatccaccgtatattttagagcat
ctggaggaaatggcaaaaatcctcaaccaccccagagtctacgcttttctccacatcccg
gtgcagtctgcctctgacagtgtgctcatggacatgaagagagagtactgcgtggccgac
ttcaaaagagttgtggattttctcaaggagaaggttcctggaataacgattgctacggat
attatctgtggttttcctggagaaaccgatcaggattttcaagaaaccgtgaaacttgtt
gaagagtacaaatttccaagcctcttcatcaaccagttctatccaagacccggaaccccc
gctgcaaaagccaaacaagtcccagcacacgtgaaaaaacaaagaacaaaagatctatct
cgggtgtttcattcctacaacccatatgatcacaagattggcgaaagacaacaagtgtta
gtcacagaagagtcttttgactccaagttttatgttgcacataaccgattctatgagcag
gtcttagtgccaaagaaccctgcattcatgggaaaaatggttgaggtcgacatttatgaa
tcaggaaaacacttcttgaaaggacagccagtatcagaaaccagagtctatacaccctcc
atctgcaagccgctggccaagggagaagtctcaggtttgacaacggaattcagaaataga
cttggggatcgtctgaattcaacttcgggcacctgtcctgcacctccacagggctcggcc
tgttccagaatggcgctgcagacgtcccagtatgactgtgcactgaaggtggctgcaggc
ctggctctcatcgctctccttctgcatttctggcctgagtctatgtttacaatgtaa
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