Rattus norvegicus (rat): 361399
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Entry
361399 CDS
T01003
Symbol
Edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
361399 (Edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
361399 (Edc4)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
361399 (Edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
361399 (Edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
DUF445
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
361399
NCBI-ProteinID:
NP_001028240
RGD:
1562009
Ensembl:
ENSRNOG00000024025
UniProt:
Q3ZAV8
LinkDB
All DBs
Position
19:50683924..50695916
Genome browser
AA seq
1407 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAGGSNVESQRPSSAYNGDLNGLLVPDPLSSGDGNS
TSKPGIRTMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGDLFVWRLALVKGKIQEEILVHIRQPEGTPLNHFRRIIWCPF
IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHSTWPVDVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQDEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEESDSLGTESSHGAGTLESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLSTHTA
HEDFTFGESRPELGSEGLASAPHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFMT
PTASLQQISASPSSSSSSSSSSSSSSSSSSSSSLTAVSAVSSSSAMDPSLPSRPPEELTL
SPKLQLDGSLTISSSSSLQASPRSLLPGLLPGPADKLIPKGPGQVSSGTSALSLDLQEVE
PLGLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSVPEGLIEPDSMASAAS
ALHLLSPRPRQGPELSSQLGLDGGPGDGDRHSTPSLLEAALTQEVATSDSQVWPTAPDIT
RETCSTLTESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDTSAEQSDHDDEVASLASASGG
FGSKIPTPRLPAKDWKTKGSPRTSPKLKRKSKKDDGDSAVGSRLTEHQVVEPPEDWPALI
WQQQRELAELWHNQEELLQRLCAQLEGLQSTVTDHVERALETRHEQEQRRLERALAEGQQ
RGGQLQEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKL
TAVEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMF
QQINDSFRLGTQEYLQQLDSHMKSRKAREQEAREPVLAQLRGLVSTLQNATEQMAATVSS
SVRAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPV
PSAHLDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLS
QPVLLSLIQQLASDLGTRSDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQ
ADPHNSLGKAARRLSLMLHGLVTPSLP
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcgcgagcatcgacattgaggacgccacgcagcatctgcgggacatcctc
aaactggaccggcccgccggaggctccaatgtcgaaagccaaaggccatccagtgcctac
aatggagacctcaatgggctcctggtcccagatccgctcagttcaggagatggtaactcg
acaagcaaacctggtatacggaccatgccacccattaatctgcaggaaaagcaggtcatt
tgcctctctggagatgacagctccacgtgcattgggattttggccaaggaggtagaaatt
gtggccagcagtgattctagcatttccagcaaggcgcgagggagcaacaaggtgaaaatc
cagcctgtagccaagtatgactgggagcagaaatactactatggcaacctgattgcagtg
tctaactccttcttggcatacgccatcagggctgccaacaatggctcagccatggtccga
gtgatcagtgtgagcacttcggagcggaccctgctcaagggcttcacaggcagtgtggct
gaccttgcatttgcacacctcaactctccacagcttgcctgcctggacgaggccggcgat
ctctttgtgtggcgactggctctggttaagggcaaaattcaagaagagatcttagtccat
atccggcaaccagagggcacaccactgaaccacttccgaaggatcatctggtgccctttc
atccctgaggaaagcgaggactgttgtgaggagagtagcccaacggtggccctgctgcat
gaagaccgggctgaggtgtgggacttggatatgcttcgctccagccacagcacatggcct
gtggatgtcagccaaatcaagcagggctttatcgtggtaaaaggccatagcacgtgccta
agtgaaggagccctttcccctgatgggactgtgctggccaccgcaagccatgatggcttt
gtcaagttctggcagatctatattgaaggtcaggatgagccaaggtgtctgcatgaatgg
aaacctcatgatgggcggcctctttcttgcctcctgttctgtgataaccataagaaacag
gatcctgaggtcccattctggaggttcctcattactggcgctgaccagaatcgagagctg
aagatgtggtgcacagtgtcctggacctgcctgcaaaccattcgcttctccccagatatc
ttcagttcagtgagtgtgcctcccagtctcaaagtttgcttggacctctcagcagaatat
ttgattcttagtgatgtgcaacgaaaggtcctctatgtgatggagctgctgcagaaccag
gacgagggccgtgcttgcttcagttccatctctgagttcctgctcacccaccctgtgctg
agctttggcatccaggttgtgagtcgctgccggctgcggcacactgaggtgctgcctgct
gaggaggagagtgacagtctggggactgagagttcccatggagctggtaccttggaatct
gcagctggtgtgcttatcaagctcttttgtgtgcacactaaggcactccaagatgtgcag
atccgcttccagccacagctgaaccctgatgtggtggccccactctctacccacactgct
catgaggacttcacatttggagagtctcgacctgaactaggctctgaggggctagcttca
gctcctcatggttcccagcctgacctccgacgcattgtggagctgcctgcacctgcagac
ttcctcagtctgagcagtgagaccaagcctaagttgatgacacctgatgctttcatgaca
cctaccgcctccctgcagcagatctctgcatcccctagtagtagcagcagcagtagcagc
agcagcagtagcagcagcagcagtagcagcagcagctctctaacagctgtgtctgctgtg
agcagctcctcagccatggacccctccttgcccagtaggccacccgaggaactgaccttg
agccccaaactgcagctagatggcagcctgactataagcagcagcagcagcctgcaggca
agccctcggagccttcttccgggcctgctcccaggcccagctgacaaactaattcccaag
ggacctggtcaggtatcttctggtacttctgcactatccttggatttgcaggaagtggaa
ccattagggctaccccaggcctccccaagtcgcacacgttctcctgatgtgatctcctca
gcatccactgccctgtcccaggacatccctgaaattgcatctgaggccctgtcccgtggc
tttggctcctctgtacctgagggcctcattgagccagacagcatggcctcagctgcctca
gcactacacctactgtctcctcggcccaggcaaggccctgagcttagttctcagcttggt
ctagatggaggccctggggatggggataggcatagtaccccttccctactggaagcagcc
ttgacccaggaagttgcaacctctgacagtcaagtctggcctacagcacctgacattact
cgtgagacctgtagcacactaacagaaagccccaggaatggcctccaggaaaagcacaaa
agcctggccttccacaggccaccttatcacctgctgcagcaacatgacagtcaggacaca
agtgctgagcaaagtgaccatgacgatgaggttgccagccttgcctctgcttcaggaggt
tttggcagcaaaattcctactccacggctgcctgccaaggattggaaaaccaagggatcc
cctaggacttcacctaagctcaagaggaaaagcaagaaggatgatggggattcagctgtg
ggatctcggctcaccgagcaccaggtggtagagccccctgaagactggccagcactaatt
tggcagcagcaaagagagctggcagaactatggcacaaccaagaagagctgctacagcgt
ctttgtgcccaacttgaaggtcttcagagcactgtcacagaccatgtagaacgtgccctg
gagacacggcatgagcaagagcaacggcgactggagcgggcactggctgaggggcagcaa
cggggtgggcagctacaggagcagctgacacagcagctatcccaggctttgtcttcagct
gtggctgggcggctagagcgcagcataagggatgaaatcaagaaaacagttcctccatgt
gtctccagaagtctggagcctgtggcaggccaactaagcaactcagtggctaccaagctt
acagctgtggaaggcagcatgaaagagaatatctctaagctactcaagtccaagaactta
acagatgccattgcccgcgcagctgcagatacgctacagggaccaatgcaggctgcctac
cgagaagccttccagagtgtggtgctgccggcttttgagaagagttgtcaggctatgttc
cagcaaatcaatgacagcttcaggctgggcactcaggaatatttgcagcagctggacagt
cacatgaagagccgaaaggcacgtgaacaagaagctagggagcctgtgttggcccagctt
cggggcctggtcagcacactgcagaatgccactgagcagatggcagccactgtgtctagc
agtgttcgggccgaggtgcaacaccagctgcatgtggctgtgggcagcttgcaggaatca
atcttagcacaagtacaacgcattgtcaagggtgaagtgagtgtggcactgaaggagcag
caggccactgtcacttccagcatcatgcaggctatgcgctcagctgctggcacacctgtc
ccctctgcccaccttgactgccaggcccaacaagcccatatcttgcagttactgcagcag
ggccacctcaatcaggccttccagcaggctctgactgctgctgatctcaacctggtgctg
tatgtgtgtgaaactgtggacccagcccaggtttttgggcagccgccctgtccactgtcc
cagcccgttctcctttccctaatccagcagctagcatctgaccttggaactagaagtgac
ctcaagctcagctacttggaagaggctgtgatgcacctggaccacagcgatcccatcact
cgagaccacatgggctctgtcatggctcaggtgcgccagaagctcttccagttcctgcag
gctgatccacacaactcacttggcaaagctgcccgccgcctcagcctaatgttacacggc
cttgtgacccctagcctcccttag
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integrated database retrieval system
