Rattus norvegicus (rat): 361605
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Entry
361605 CDS
T01003
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
361605 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rno03021
]
361605 (Pcf11)
03019 Messenger RNA biogenesis [BR:
rno03019
]
361605 (Pcf11)
Transcription machinery [BR:
rno03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
361605 (Pcf11)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
361605 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
361605
NCBI-ProteinID:
XP_008757879
RGD:
1563397
Ensembl:
ENSRNOG00000009891
UniProt:
A0A8I6GJT1
LinkDB
All DBs
Position
1:complement(156109724..156136950)
Genome browser
AA seq
1867 aa
AA seq
DB search
MVTNDRTVPYELANENRPSFAQRLGAGGVAKAQSRPGKKAALGRIAEGPGAGPVTRAGQP
IPPGVSNGPAPLPHISPPLVHFARRSGWEHRHFRSWSRHCRRHFVSVEKEAPAAAGSRRR
FPVRLRRFFPEVPPGSSPIPPPRSACGEAAAAGDPGSEAEASEGRRGVERLQLRRRRTSE
GGRGAMSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIV
SLIEAQTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSL
FKLRSTWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPDEPST
PGTVVSSPNISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLA
VSLSVQQETANLGPGSAPSKLHVPQIPTMAVKTPHQVPVQPDKSRVGPSLQMQDLKGTNR
DPRLNRMSQHSSHGKEQSHRKEFVMNTINQSDIKTSKTVPSEKLNSSKQEKSKSGERITK
KELDQLDSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKHLQDKAEG
KDEDVKEKRKTAEKKDKDEHMKSSEHRLIGSRSKIINGVVQKQDMVTEELEKQGTKPGRS
STRKRSRSRSPKSRSPIVHSPKRRDRRSPKRRQRSMSPTLAPKAGKMRQSGLKQSHMDEF
PPPSREERNIKRSAKQDVRDPRRLKKMDEDRPQETAGQHSMKSGGDPKENIENWQSSKSA
KRWKSGWEENKSLQQGDEHSKPPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKE
LTLASKRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPKEENKGG
LKKKPLLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKS
KHASRNSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQR
SPFNDRFPLKRPRYEDSDKPFVDGPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVTRDG
PTKMIFEGPNKLSPRIDGPPTPGSLRFDGSPGQIGGGGPMRFEGPQGQLGGGCPLRFEGP
PGPVGTPLRFEGPIGQGGGGGFRFEGSPSLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQ
PVGGLRFEGPHGQPVGSLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFE
GPLLQQGVGMRFEGPHGQSVAGLRFEGHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGG
MRFEGPVPGGGLRIEGPLGQGGPRFEGCHSLRFDGQPGQPSLLPRFDGLHGQPGPRFERT
GQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRIESF
NQTGPYSDPPGNAFNVPSQGLQFQRHEQIFDTPQGPNFNGPHGPGNQNFPNPINRPSGHY
FDEKNLQSSQFGNFGNLPTPMSVGNIQTSQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFI
QNPSGGLPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATAQVNEAVAQPPPEEEED
QNEDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQ
NRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKE
FQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSF
DCTPSPSKTPVENPLNIMLNIVKNELQEPCENPKVKEEQIDAPPACSEESVATPTEIKTE
SDTVESV
NT seq
5604 nt
NT seq
+upstream
nt +downstream
nt
atggtaacaaatgaccgaacagtcccttacgaattggccaatgagaaccgaccgtccttt
gcacagcgtctcggagcaggaggtgttgcgaaagcccagtctcggccgggaaagaaggcg
gcgcttggacgtattgcggaagggccgggggcggggcctgtgacacgcgcgggccagcca
atcccgcctggtgtttccaacggccccgcccctttaccgcacatttcccctcccctagtt
catttcgcacgacgcagcggttgggaacacagacattttcggagctggagccgccactgc
cgccgccattttgtgtctgtggagaaagaagccccggcggcggctggaagtagacggaga
ttccccgtgaggctgcggcgtttcttccccgaggttccccctgggtcgtcccccatcccc
cctccgcggtcagcatgtggtgaagccgcagccgccggagacccggggagcgaggccgag
gcgtcggaagggaggcggggtgtcgagcggcttcagcttcggcggcggcggacctcggag
gggggccgcggcgcaatgtcagagcagacgcccgccgaggccggggctgcgggggcccgg
gaggacgcctgtcgggattatcagtcgtcgctggaagacctgaccttcaatagcaaaccg
cacatcaatatgctgaccattctagccgaggagaacctgcccttcgccaaggagatcgtc
tctctcatcgaggcccaaaccgccaaggctccttcctcagagaagcttccagttatgtac
cttatggattctatcgtgaaaaatgttggaagagagtatctcactgcctttactaaaaat
ctagttgcaacatttatttgtgtgtttgaaaaggtggatgaaaatactagaaaaagttta
tttaaattacgttccacatgggatgaaatattccctttgaagaaactttatgccttggat
gtcagagtcaattcattagatcctgcttggcctattaaacctctgcctcctaatgtgaat
acatctagcatccatgtgaatcccaaatttttaaataaatcgcctgatgagccttcaaca
cctggcacagtggtcagttcccctaatatctccactcctcccattgtacctgatatacaa
aagaatctcacccaggaacaactaataaggcaacagttactggcaaaacaaaaacagttg
ctagaacttcagcagaaaaagctggaactggagttagaacaagctaaggcacaactggca
gtatctctgagtgttcagcaggagacagccaacttgggtcctggttcagcaccatctaaa
ttacatgttcctcaaattcccactatggctgttaaaactccccatcaggtccctgtacaa
cctgacaaaagccgagtgggtccctccttacaaatgcaagatttgaaaggaactaaccgg
gatccccgacttaacaggatgagccaacattcttcccatggcaaagagcagagtcatagg
aaagaatttgtaatgaatacaataaaccagtctgatattaaaacaagtaagactgtgccc
tctgaaaaactaaattcatccaagcaagaaaaaagtaaatcaggtgaaagaataaccaag
aaagaacttgaccagttagattctaaatctaaatctaagtctaaatcaccatcacctttg
aaaaacaaattatcccacacaaaagacttgaaaaatcaagaatctgaaagtatgaggttg
tctgatatgaacaagagagatccacgattaaagaagcatcttcaggataaagctgagggc
aaagatgaagatgtaaaagaaaagagaaaaactgcagaaaagaaggataaagatgagcac
atgaaatcatctgaacatagattgattggcagtagaagtaaaatcataaatggcgttgtc
caaaaacaagacatggttacagaagaattggaaaaacaggggacaaaaccagggagatca
agtactagaaagagatcgagatcaaggtcacctaagtctcggtcaccaattgtacattcc
ccaaagagaagagatagacggtcacccaaacgaaggcaaagaagtatgtctcccactttg
gcacccaaagctggaaagatgcgtcagtcaggtcttaaacagtcacatatggacgaattt
ccaccaccttccagggaagaaagaaatattaagagaagtgctaagcaggatgttcgagat
cccagacgactcaaaaagatggatgaggaccggcctcaagaaactgcaggtcaacattct
atgaagtcaggtggtgacccaaaggagaatatagagaattggcaaagctctaagtctgcc
aaaagatggaaatctggttgggaagaaaataaaagcttacaacagggagatgaacatagt
aagcctcctcatctaaggcatagggaaagctggtcaagcactaaaggaatcttgtcacct
cgagctccaaagcagcagcatcgattaagtgtagatgccaatcttcaaattcctaaagaa
ttaactcttgcaagcaaaagagaattacttcaaaagacgagtgaacgtttagcatctggt
gaaattacacaggatgagttccttgttgttgtgcatcaaattcgacagctatttcagtat
caagaaggtaaacatagatgcaatgtacgggatagtcctaaagaagaaaataaaggtgga
ttaaaaaagaaacctctcttatctgatgctgaattaacctactatgaacataaagcaaaa
ctgaaaaggacacaggttcagcattcatttccaagacttgatctcttagatcctgatatt
tttgactaccctttgactgatgccttgttgtctggaatagaatgtgagccatccaaaagt
aaacatgcaagtaggaatagtggagcacagtttgacagaaaagaacaatttagtgaaaga
gcaagacgtctttctcctatatctgggagtcgtacttatgctgagaatctttcaccccat
gagggccggagaagacatgacgagcaagtctctgctaaaggtgtacgagaggagcagaga
tcgccatttaatgatcgttttccacttaagcgacctagatatgaagattcagataaacca
tttgtagatggcccagcatcaagatttgctggccttgatacaaatcagcgacttacagct
ctagctgaagaccgaccgttatttgatggacctggtaggccatctgtgacgagagatggc
ccaaccaagatgatttttgaaggacctaataaattaagccctagaattgatggacctcct
acaccaggttctcttcggtttgatgggtcaccaggacaaattgggggaggaggccctatg
agatttgaaggaccacaaggtcagttaggaggtgggtgtcctttgagatttgaaggccct
ccaggaccagtaggaacacctctgcggtttgaagggccaattggtcaaggaggaggaggt
ggttttcgttttgaaggttcacctagtctgaggtttgagggatctgcaggtggtttacga
tttgaaggaccagggggtcagcctgtgggtggtctcaggtttgaaggacatcgtggtcaa
cctgtgggtggtctcaggtttgagggacctcatggacagcctgtgggcagtcttagattt
gataatcctcgaggtcagcctgtaggtggactcagatttgaagggggtcatggtccatca
ggggctgcaattaggtttgatgggcctcatggtcagccaggtggtggtatcagatttgag
ggccctttgctacagcaaggagttggaatgaggtttgagggtccccatggtcagtctgta
gctggtctgagatttgaaggacataatcaactaggtgggaaccttaggtttgagggacca
catggtcaaccaggggttgggatcaggtttgaaggacctttagttcaacaaggaggtgga
atgaggtttgagggtcctgtaccaggaggtggcctgagaattgaagggcctctgggtcaa
ggtggtcctagatttgaaggttgtcactctttaaggtttgatggacagccaggtcagcca
tcacttttgccaagatttgatggattacatggccagccaggtcctagatttgaaagaact
ggtcagccaggtccacagagatttgatgggccacctggacagcaggttcaaccgagattt
gatggtgtacctcaaagatttgatgggccacagcaccagcaagcatcaagatttgatatt
cctcttggtctacaaggaacccgatttgacaatcatccttcacaaaggattgaatctttc
aatcagactggcccatatagtgatccaccgggcaatgcttttaatgttccatctcaagga
ctacagttccaaagacacgaacaaatatttgatacacctcaaggaccaaattttaatgga
ccacatggccctggaaaccagaatttcccaaatcccattaacagaccatccggacactat
tttgatgaaaagaatcttcagagttctcagtttggaaactttggcaatttacctacacca
atgtcagtaggaaatattcagacatctcaacaggttctgactggtgttgctcagccagtt
gcgtttggccaaggacaacagtttttaccagttcatccacagaatcctggagcttttatt
caaaatccttcaggcggtcttcctaaggcctaccctgataatcatctcagtcaggtggat
gtaaacgaattgttttcaaaactgctaaaaacaggaattctcaaattgtcacagcctgac
tcagctacagcacaggtaaatgaggctgttgctcagcctccccctgaggaggaggaggat
cagaatgaagatcaagatgttccagatcttactaatttcacaattgaagaattgaagcaa
cgttatgacagtgtaataaaccggctgtacactgggattcaatgttactcttgtggaatg
aggtttacgacatcccagacagatgtttatgcagatcacttggactggcattatcgacag
aatagaactgagaaagatgttagcagaaaagtcactcacagacgttggtactacagtcta
acagactggatagaatttgaagaaatagctgatctggaggaacgtgcaaaaagccagttt
tttgaaaaggttcatgaagaggttgtccttaaaactcaggaggctgctaaagaaaaggag
ttccaaagtgtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagag
caatttgaacagtactgggatgaagaggaggaagaatggcacttaaaaaatgctattaga
gtagacggaaagatttaccatccatcatgttatgaagattatcaaaatacatcttcattt
gattgtacaccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaac
attgtcaaaaacgaattacaagaaccctgtgaaaatcccaaagttaaggaagaacaaatt
gatgccccaccagcttgttcagaagaaagtgtagcaacacccactgaaattaaaacagaa
agtgatacagttgagtcagtttaa
DBGET
integrated database retrieval system
