Rattus norvegicus (rat): 361649
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Entry
361649 CDS
T01003
Symbol
Atxn2l
Name
(RefSeq) ataxin-2-like protein isoform 1
KO
K23625
ataxin 2/2L
Organism
rno
Rattus norvegicus (rat)
Pathway
rno05014
Amyotrophic lateral sclerosis
rno05017
Spinocerebellar ataxia
rno05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
361649 (Atxn2l)
05017 Spinocerebellar ataxia
361649 (Atxn2l)
05022 Pathways of neurodegeneration - multiple diseases
361649 (Atxn2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
361649 (Atxn2l)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
361649 (Atxn2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
Motif
Other DBs
NCBI-GeneID:
361649
NCBI-ProteinID:
NP_001123569
RGD:
1565868
Ensembl:
ENSRNOG00000018686
UniProt:
B3DMA1
LinkDB
All DBs
Position
1:complement(190508878..190526263)
Genome browser
AA seq
1072 aa
AA seq
DB search
MLKPQPPQQTSQPQQPPPTQQAVARRPPGGTSPPNGGLPGPLPATAAPPGPPTVVSPCLG
PAAAAGSGLRRGAESILAAPAPQQHQERPGAVAIGSVRGQTTGKGPPQSPVFEGVYNNSR
MLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVDAVHRKASEPAGGPRREDIVDT
MVFKPSDVLLVHFRNVDFNYATKDKFTDSAIAMNSKVNGEHKEKVLQRWEGGDSNSDDYD
LESDMSNGWDPNEMFKFNEENYGVKTTYDSSLSSYTVPLEKDNSEEFRQRELRAAQLARE
IESSPQYRLRIAMENDDGRTEEEKHSAVQRQGSGRESPSLVSREGKYIPLPQRVREGPRG
GVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGPGSEARGINGGPSRMSPKAQRPLRGGKTL
SSPNNRPSGEASVPPTSAVGRMYPPRSPKSAAPAPVSASCPEPPIGSAVASSASIPVTSS
VVDPGAGSISPASPKLSLAPTDVKELPTKEPSRSLEAQELARIAGKVPGLQNEQKRFQLE
ELRKFGAQFKLQPSSSSETGLDPFPSRILKEEAKGKEKEVDGLLTSDPMGSPVSSKAESI
LDKEDKVPLAAVAGSEGPEQLQPPCPSQTGSPPVGLIKGDDKEEGPVTEQVKKSTLNPNA
KEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSIPVLTAGQSGLYSPQYISYIPQIHMGPAV
QAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQRSDQHQPASAPPMMQAAAAAAGPPLVAAT
PYSSYIPYNPQQFPGQPAMMQPMAHYPSQPVFAPMLQSNPRMLTSGSHPQAIVSSSTPQY
PSAEQPTPQALYATVHQSYPHHATQLHGHQPQPATTPTGSQPQSQHAAPSPVQAGQAPHL
GSGQPQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHPHQQLPHGFTNMAHV
TQAHVQTGVTAAPPPHPGAPHPPQVMLLHPPQGHGGPPQGAVPPSGVPALSASTPSPYPY
IGHPQGEQPGQAPGFPGGADDRIREFSLAGGIWHGRAEGLQVGQDARVLGGD
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagcctcagccgccacaacagacctcccagccccagcagccgccccccacgcaa
caggccgtggctcgccggcctcccggcgggactagccctcccaacggcggcctcccggga
ccgctgcccgctaccgcggctcccccggggcctcccacagtggtctctccgtgcctgggg
cctgcagccgctgccggcagcgggctccgccgcggagccgaaagcatcttggcggcgcca
gcgccgcagcagcatcaagaacggccaggggcagtggctatcggcagcgtcaggggacag
accaccggaaagggacccccacagtcaccagtgtttgaaggtgtctataacaattccagg
atgctgcatttcctgacagctgtagtgggttctacctgtgatgtaaaagtgaaaaatggc
accacttatgagggcattttcaagacgctgagctcaaagtttgaactggcagtagatgcg
gtacatcggaaagcctctgagccagcaggtgggcctcgtcgggaagacattgtggacacc
atggtgtttaaaccaagtgatgttctgcttgtccacttccgaaatgttgacttcaattat
gctactaaagacaagttcactgactcagccattgccatgaactctaaggtgaatggagaa
cacaaagagaaggtgcttcagcgttgggagggcggtgacagcaacagtgatgactacgat
ctggaatccgatatgtctaatggatgggatcctaatgagatgttcaaatttaatgaggag
aactatggagtgaagaccacctatgacagcagtctatcttcttacacggttcccttagaa
aaggacaactctgaagagtttcggcagcgggagcttcgcgcggcccagttggctcgggag
attgagtctagtccccagtaccgtctacggattgccatggaaaatgacgacgggcgaacc
gaggaggagaagcacagtgcagttcagcggcaggggtccgggcgggagagccccagcttg
gtgtccagggaagggaaatatatccctctgcctcaacgagttcgggaaggtccccgggga
ggagttcgatgcagcagttctcgaggagggcggcctggccttagctctttgccacctcgt
ggccctcaccatcttgacaacagcagtcctggtcctgggtctgaggcacgtggtatcaat
ggaggtccttcccgcatgtcccccaaggcacagcggcctctgagaggtggcaagacctta
tcttcacccaacaataggccttctggagaagcttctgttcctccaacatctgcagtgggc
cggatgtaccctccacggtctcccaagtctgctgcccctgccccagtctcagcttcctgt
cctgagcctcccattggttcagcagtagcatcctctgcctccatccctgtgacatcatca
gttgtggatcctggagcaggctctatttccccagcatctccaaaactctccctggcccct
acagatgtaaaagaactcccaaccaaggagcccagtaggagtttggaagcccaagagctg
gcccgcatagctgggaaagtccctggccttcagaatgaacaaaaacgctttcagttggaa
gaactgaggaaatttggggcccagtttaagcttcaacctagtagctcctctgagacgggc
ctggatccatttccttcccggatcttgaaagaagaggccaaaggaaaggagaaagaagtg
gatggtctattgacttcagatcctatgggatccccagtctcctccaaggcagaatccata
ttggataaggaagacaaagtgcccctggcagcagtagcggggtctgaggggccagaacag
ctccaaccaccttgccccagccaaactggcagtcctccagtgggcctcatcaagggagat
gacaaagaggagggcccggttactgaacaagtaaagaagtctactttgaaccccaatgcc
aaggagttcaatccaacaaagcctctgctgtctgtgaacaaatctaccagtactccaact
tcaccagggccccgtactcattcaacaccttccataccggtgctgacagcaggccagagt
gggctctacagtccccagtacatctcatatatacctcagatccacatgggaccagctgtg
caggcacctcagatgtatccatatcctgtatccaattcggtgcctgggcagcagggcaag
taccggggtgcaaaaggctcacttcccccccagcgctctgaccaacaccaaccagcctca
gcccctccaatgatgcaggctgctgctgctgctgctggcccacccttggtggctgccaca
ccttattcctcctacatcccttacaacccacagcagttcccaggccagcctgccatgatg
cagcccatggcacactacccttcacagccggtgttcgcccctatgcttcaaagtaatcca
cgaatgttgacatcgggaagccatccccaggccatcgtgtcatcctccactcctcagtac
ccttctgcagagcagcctaccccccaagccctttatgccactgttcaccagtcctatcca
caccatgccacgcagctccatggccaccagcctcagccggccaccactcctactgggagc
caaccacaatcccagcatgcggcccccagtcccgttcaggcggggcaggccccacacctg
ggcagtggacaaccacagcagaatctgtaccatccaggggccctaacaggcacgccacct
tctctaccaccgggaccttctgcccagtcccctcaaagcagcttcccccagccagctgct
gtgtatgccatccatccccaccagcagctgccccacggcttcaccaacatggcccatgtt
acccaggcccatgtccaaactggagtcacagcagccccgcccccacaccctggggctccc
cacccgccccaggtgatgctgctgcaccccccccagggccatgggggccccccccaaggc
gcggtgcccccgagtggggtgcctgcactctcagcttccacaccctcaccctacccctac
atcggacacccccaaggtgagcagcctggccaggcgcctggatttccaggaggagccgat
gacaggattcgtgagttctcgttagctgggggaatttggcatggaagagctgaggggctg
caggtggggcaggatgcacgggttctgggtggggattga
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integrated database retrieval system