Rattus norvegicus (rat): 361825
Help
Entry
361825 CDS
T01003
Symbol
Smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03082
ATP-dependent chromatin remodeling
rno03250
Viral life cycle - HIV-1
rno04714
Thermogenesis
rno05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
361825 (Smarcb1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
361825 (Smarcb1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
361825 (Smarcb1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
361825 (Smarcb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rno01009
]
361825 (Smarcb1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rno03021
]
361825 (Smarcb1)
03036 Chromosome and associated proteins [BR:
rno03036
]
361825 (Smarcb1)
Protein phosphatases and associated proteins [BR:
rno01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
361825 (Smarcb1)
Transcription machinery [BR:
rno03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
361825 (Smarcb1)
SWI/SNF complex
361825 (Smarcb1)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
361825 (Smarcb1)
PBAF complex
361825 (Smarcb1)
SWI/SNF complex
361825 (Smarcb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
361825
NCBI-ProteinID:
NP_001020899
RGD:
1308761
Ensembl:
ENSRNOG00000028302
UniProt:
Q4KLI0
LinkDB
All DBs
Position
20:12740105..12763054
Genome browser
AA seq
376 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYLREQKAKRNS
QWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQPEVLVPI
RLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASAIRQQIESYP
TDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVT
TIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQD
RNTRRMRRLANTAPAW
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgttgagcaagaccttcgggcagaagcccgtcaagtttcagctggag
gacgacggggagttctacatgatcggctccgaggtgggaaactacctgcgtatgttccga
ggttctctgtacaagagatacccctcactctggcggcgactagccactgtggaagaaagg
aagaaaatagtggcatcgtcacatgaccatggatacaccaccctggccaccagcgtgacg
ctactgaaagcctcagaggtggaagagattctggacggcaatgacgagaagtacaaggct
gtgtccatcagcacagagcccccaacctacctcagggaacagaaggccaagagaaacagc
cagtgggtccccaccctgcccaacagctcccaccatctggacgctgtgccgtgctccacc
accatcaataggaatcgcatgggtcgggacaagaagagaaccttccccttgtgctttgat
gaccacgacccagctgtgatccatgagaatgcatctcagcccgaggtactggtccccatt
cggctggacatggagatcgacgggcagaagctgcgagacgcttttacctggaacatgaat
gagaagctaatgaccccagagatgttttcagaaatactttgtgatgacctggacttgaat
ccactgacttttgtgccagctattgcctctgccattcgacagcagatcgagtcctacccc
acagacagcatcctggaggaccaatctgaccagcgtgtcatcatcaagctgaacatccat
gtggggaacatctccctggtggaccagtttgaatgggacatgtcagagaaagagaactcc
ccagagaagtttgccctgaagctgtgctcagagctgggcttgggcggggagtttgtcacc
accattgcgtacagcatccgaggacagctgagctggcaccagaagacctatgccttcagt
gagaacccacttcccacagtggagattgccatccgaaatactggagatgctgaccagtgg
tgccccctgctggagacactgacggatgctgagatggagaagaagatccgggatcaagac
aggaacacaaggcgaatgaggcgtcttgccaacactgccccagcctggtga
DBGET
integrated database retrieval system
