Rattus norvegicus (rat): 361927
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Entry
361927 CDS
T01003
Symbol
Fxr1
Name
(RefSeq) RNA-binding protein FXR1 isoform 4
KO
K15516
fragile X mental retardation protein
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
361927 (Fxr1)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
361927 (Fxr1)
Factors involved in mRNA localization
Other mRNA localization factors
361927 (Fxr1)
mRNA cycle factors
Stress granule specific factors
361927 (Fxr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
FXR_C1
KH_9
Tudor_FRX1
KH_1
Agenet
KH_2
KH-I_KHDC4-BBP
Tudor_2
DUF150_C
Motif
Other DBs
NCBI-GeneID:
361927
NCBI-ProteinID:
NP_001012179
RGD:
1311733
Ensembl:
ENSRNOG00000051480
UniProt:
Q5XI81
A0A0G2JWD2
LinkDB
All DBs
Position
2:118812287..118865813
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AA seq
568 aa
AA seq
DB search
MAELTVEVRGSNGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKKEIS
EGDEVEVYSRANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKT
VKKNTFFKCTVDVPEDLREACANENAHKDFKKAVGACRIFYHPETTQLMILSASEATVKR
VNILSDMHLRSIRTKLMLMSRNEEATKHLECTKQLAAAFHEEFVVREDLMGLAIGTHGSN
IQQARKVPGVTAIELDEDTGTFRIYGESAEAVKKARGFLEFVEDFIQVPRNLVGKVIGKN
GKVIQEIVDKSGVVRVRIEGDNENKLPREDGMVPFVFVGTKESIGNVQVLLEYHIAYLKE
VEQLRMERLQIDEQLRQIGMGFRPSSTRGPEKEKGYATDESTVSSVQGSRSYSGRGRGRR
GPNYTSGYGTNSELSNPSETESERKDELSDWSLAGEDDRETRHQRDSRRRPGGRGRSVSG
GRGRGGPRGGKSSISSVLKDPDSNPYSLLDNTESDQTADTDASESHHSTNRRRRSRRRRT
DEDAVLMDGMTESDTASVNENGLGKRCD
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggcggagctgacggtggaggttcgcggctccaacggggctttctacaagggatttatc
aaagatgtccacgaagactccctcacagttgtttttgaaaataattggcaaccagaacgc
caggttccgtttaatgaagttcgattaccaccaccacctgatataaaaaaagaaattagt
gaaggagatgaagtagaggtatattcaagagcaaatgaccaagaaccatgtggatggtgg
ctggctaaagttcggatgatgaaaggcgagttttatgtcattgaatatgctgcttgtgat
gccacttacaatgaaatagtcacatttgaacgacttcggcctgtcaatcaaaataaaact
gtcaaaaaaaataccttctttaagtgcacagtggatgttcctgaggatttgagagaagcg
tgtgctaatgaaaatgcccataaagatttcaagaaagcagtaggagcgtgcagaattttc
tatcatcctgaaactacccagctaatgatactgtcggccagtgaagcaactgtgaagaga
gtaaatatcttaagtgatatgcatttgcgaagtattcggacgaagttgatgcttatgtcc
agaaatgaagaggccactaagcatttagaatgcacaaaacagcttgcagcagcttttcat
gaagaatttgttgtgagagaagatctaatgggcctggcaataggaacgcatggtagtaac
atacagcaagctaggaaggtccctggagttactgccattgagttagatgaagatactgga
acgtttagaatctacggagagagtgctgaggctgtaaagaaagcaagaggtttcttggaa
tttgtggaagattttattcaagttcccaggaatcttgttggaaaagttattggaaaaaat
ggcaaagttattcaagaaatagtggataaatctggtgtggttcgagtaagaattgaagga
gacaatgaaaataaactacctagagaagatggaatggttccatttgtatttgttggcact
aaagaaagtattggaaatgtgcaagttcttctagagtatcacattgcttacttaaaggaa
gtggaacaactaagaatggaacgcctgcagatcgatgaacagctgcgacagattggtatg
ggtttcagaccttcttccaccagagggcctgaaaaagagaaaggatatgccactgatgaa
agtaccgtctcttctgtacaaggttctaggtcttatagtggaagaggcagaggtcgtcgg
ggccctaattacacctccggttatggtacaaattctgagctgtctaacccctccgaaaca
gaatctgagcgtaaagatgagctgagtgattggtcattggcaggagaagatgatcgagag
actcgacatcagcgagacagcaggagacgcccaggaggaagaggcagaagtgtttctggg
ggacgaggtcgtggtggaccacgtggtggcaaatcctccatcagttctgtgctcaaagat
ccagacagcaatccatacagcttacttgataatacagaatcagatcagactgcagacact
gacgccagcgaatctcaccacagtactaaccgtcgtaggcggtctcgtagacgaaggact
gatgaagatgctgttctgatggatggaatgactgaatctgatacagcctcagttaatgag
aatgggctaggcaaaagatgtgattga
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