Rattus norvegicus (rat): 361935
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Entry
361935 CDS
T01003
Symbol
Afg2a
Name
(RefSeq) ribosome biogenesis protein SPATA5
KO
K14575
AAA family ATPase
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
361935 (Afg2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rno03009
]
361935 (Afg2a)
Ribosome biogenesis [BR:
rno03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
361935 (Afg2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_16
AAA_5
TIP49
AAA_22
Mg_chelatase
AAA_28
AAA_33
NPHP3_N
nSTAND3
AAA_2
RNA_helicase
AAA_25
Parvo_NS1
Rad17
IstB_IS21
AAA_7
AAA_14
AAA_3
AAA_18
TsaE
bpMoxR
ATPase
AAA_19
AAA_24
CDC48_N
Zeta_toxin
DUF5906
Motif
Other DBs
NCBI-GeneID:
361935
NCBI-ProteinID:
NP_001402011
RGD:
1310478
Ensembl:
ENSRNOG00000017462
UniProt:
A0A8I6A2A6
LinkDB
All DBs
Position
2:122234619..122425808
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AA seq
893 aa
AA seq
DB search
MSSKKNRKRQKEGAEGTSPSLSAASSRSGTSTPLAQPNVAAPGMLVVTNFLEKVDGKVPK
TFQNSLVHLGLNTMKSANICIGRPVLLTSLDGKQEVYTAWPVAGFPGGKVGLSEMAQKNV
GVKAGETIRVQPLLGAVLQAQEMDLALSDKDKEINEEELTGCILRKLDGKIVLPGNFLYC
TFYGRLCKLQVLQVKGTDGTTLGKPQSSSGTDVHGMASEQSSMESSDVDISFQLSQLDLK
EPQSPASQSTPCKPINDRTMNKAGEVLLDVTQSPRDGSGLGLEEITGLKCSFDSSKEGNT
QPISEEKLLKSTSAGAKNNTDTFYFISSTTRINLRKICTNSKEQDSQFKVTYDMIGGLNS
QLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANEVGAYVSVING
PEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVEKRVVASLLTL
MDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPNAQDRLDILQKLLRRV
PHLLTKAELLRLANNAHGYVGADLKALCNEAGLYALRRVLRKQPNLPDSKVAGMVKITLN
DFLQGMNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFSRMGIQP
PKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREVFRKARAVA
PSIIFFDELDALAVERGSSSGAGNVADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDK
ALMRPGRIDRIIYVPLPDAATRREILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVC
KEAALLALEENIKADCIMKRHFTQALSIVTPRIPESLRRFYEDYQEKSGLHMV
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaagaagaacagaaagcgacagaaagagggcgcggaggggacctcgccctcg
ctctctgcggcttcgtctcgctcggggacctcgactcctctcgctcagccgaacgtggcg
gcgccggggatgttggtggtgaccaactttcttgagaaagtagatggcaaagttcctaag
acattccagaattccctagttcatcttggacttaacactatgaagtctgcaaacatatgt
ataggtcgaccagtgctccttaccagtttggatggaaagcaggaggtttatacagcctgg
ccagttgcaggatttcctggaggcaaggttggtctaagtgaaatggcacagaagaatgtg
ggtgtgaaagctggtgagaccatccgggtccaacctcttttgggtgctgtacttcaggcc
caggaaatggacttggcactgagtgacaaagataaggaaattaatgaagaagaactgact
ggttgtattctgagaaaactagatggcaagattgttttaccaggcaactttctgtactgt
acattctatggacgactctgcaagttacaagtgttgcaagtaaaagggacagatggcaca
acattgggaaagcctcagagctcctctggcactgatgtccatggaatggcctctgagcag
tctagcatggaaagcagtgatgtggatatttcattccagctaagccagttagatctgaaa
gaacctcagagcccagcatcacagagtactccctgtaaacccatcaatgacagaactatg
aataaagctggtgaagttttgttggatgttacacagagccctagggatggaagtggactt
ggactagaggaaatcacagggcttaagtgtagttttgattcatccaaagaaggaaataca
caacctatcagtgaagagaaactactaaaatctactagtgcaggtgcaaagaacaatact
gatactttttattttatttcttcaacaacaagaatcaatcttcgaaaaatttgtacaaat
tcaaaagaacaagacagtcagttcaaagtaacttatgacatgattggaggcttaaacagt
cagctgaaagcaataagagaaataattgaactgcctctcaagcagcctgaacttttcaag
agttacggaattccagcacctagagggttattactctatggtcctccaggtaccggaaag
acaatgattgctagggctgttgctaatgaagttggagcttatgtttctgtaattaatggt
cctgaaattataagcaaattctatggtgagactgaagcaaggttacgccagatatttgct
gaagccactctacggcatccatcgattatttttattgatgagctggatgcactttgccct
aaaagagaaggagctcaaagtgaagtggaaaagagagttgtagcttcgctcttaacattg
atggatggcattggctcagaaggaagtgaaggacgggtattagtccttggggccacaaat
cgccctcaagcgctagatgctgcactcagaagacctgggcgatttgataaagagattgag
attggcattcctaatgcccaagaccggcttgatattctccagaaactactccgaagggtg
ccacacttactcaccaaagctgagcttctgagattggcaaataatgcccatggttatgtt
ggcgcagacttgaaagccttgtgtaatgaagcaggtctgtatgccttgcgaagagtcctg
aggaaacagcctaatctccctgatagcaaggtggctggcatggtgaagattaccctaaat
gatttcttacaggggatgaatgatatcaggcctagtgctatgagagaggtagcaattgat
gtcccaaatgtatcctggtcagatattggaggactggaaaatatcaaactgaaattgaaa
caggctgtggaatggcccttgaaacatcctaagtctttcagcagaatgggtattcagcca
cctaaaggagttctcttgtatgggcctcctggatgctcaaaaacaatgatagcaaaggct
ttggccaatgaaagtgggttgaactttctagctataaaggggcctgaattaatgaataag
tatgttggtgaatctgaaagagcagttagagaggtattccgtaaagcaagagcagtggca
ccttccattatcttttttgatgaacttgatgccttggctgttgaaaggggcagttcttca
ggtgccgggaatgttgcagatcgtgttttggctcagctgttaacggaaatggatggaatt
gaacagctaaaaaatgtgacagttttggcagctactaatcgcccagatagaatagacaag
gctctgatgaggcctggaagaattgacaggatcatttatgtgcccttaccggatgcagca
acaagaagggaaatactgaacttgcagttccactcaatgccaatcagtaacgaggttgac
ctggatgaactggtcctccaaactgacacctactcaggagcagagatcatagcagtctgc
aaggaggccgctctcctagctctggaagaaaacattaaagctgactgcattatgaagagg
catttcactcaagccttgagcattgtgacacccagaatcccggagtcactgaggcgcttt
tatgaagattaccaagagaagagtgggttacacatggtctaa
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