Rattus norvegicus (rat): 362178
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Entry
362178 CDS
T01003
Symbol
Cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
362178 (Cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
362178 (Cstf3)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
362178 (Cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
362178
NCBI-ProteinID:
NP_001071140
RGD:
1305901
Ensembl:
ENSRNOG00000012089
UniProt:
A0JPN7
LinkDB
All DBs
Position
3:111421291..111492539
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AA seq
590 aa
AA seq
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MSGDAAAEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH
SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK
SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPCSASE
LKALGYKVCTQQQDGRSVPLPLRFQESMHCTVFILRSILYSVATKTKIFH
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggagacgcagccgcggagcaggcagctgaatatgtcccagagaaggtgaagaaa
gcggaaaagaaattagaagaaaatccatatgaccttgatgcttggagcattctcattcga
gaggcacagaatcaacctatagacaaagcacggaagacttacgaacgccttgttgcccag
ttccccagttctggcagattctggaaactgtacattgaagcagagattaaagctaaaaat
tatgacaaggttgaaaagctatttcaaagatgccttatgaaggttttgcacattgattta
tggaagtgttatctttcatacgtcagagaaaccaagggtaaactgccaagttacaaagaa
aaaatggctcaagcttatgactttgcactggataaaattggaatggaaattatgtcctat
cagatttgggtggattacatcaatttcttaaaaggcgtggaagctgtaggatcttatgca
gaaaatcagagaataactgctgtccgaagagtttatcaacgaggttgtgttaatccaatg
atcaacattgaacaactctggagagactacaacaagtatgaagagggtatcaatattcat
ttagctaaaaagatgattgaagatcgaagtagagactacatgaatgctagacgtgtagca
aaggaatacgagacagtgatgaaaggtttggaccgcaatgccccttcagtgccccctcag
aatacccctcaagaagctcagcaagtagacatgtggaagaagtacatccagtgggagaag
agcaaccccctgcgtaccgaggaccagaccctcataacaaagcgagttatgtttgcctat
gaacagtgcctacttgtgctgggccatcaccctgatatctggtatgaagctgcccagtat
ctggaacagtcgagtaagctgctcgcagaaaagggggatatgaacaatgccaaattattt
agtgatgaagctgctaatatatatgaacgagccatcagcactttattaaagaagaacatg
ctcctttactttgcatatgcagattatgaagagagtcgcatgaagtacgagaaagttcac
agtatatataacagactgctggcaattgaggacattgaccccaccttggtatatatccaa
tatatgaaatttgcaaggagagcagaaggtatcaaatctggaagaatgatatttaaaaag
gcaagagaggatgcgagaacccgtcatcacgtctatgtgaccgcagcgctcatggagtat
tactgcagtaaggacaaatctgttgcctttaagatttttgaattgggactaaagaaatat
ggagatattccagagtatgttttggcttatattgactatctctctcacctcaatgaggac
aataacacccgagttctgtttgaaagagtcttgacgtctggaagccttcctcccgagaag
tccggagaaatctgggctcggtttctagcttttgaaagcaacattggtgatttagctagt
attctcaaagtggagaaaagacgctttacagcgttcagagaagagtatgaaggcaaagaa
acagctttattggtagacagatacaagtttatggatttatacccttgttctgcaagtgaa
ctcaaagcactgggctacaaggtatgtactcagcagcaagatggccgcagtgttcccctt
cccctacggtttcaggagtccatgcactgcacagttttcattctacggtcaattctttac
tctgttgctactaagacaaaaatatttcattga
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