Rattus norvegicus (rat): 362199
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Entry
362199 CDS
T01003
Symbol
Vps39
Name
(RefSeq) vam6/Vps39-like protein
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04140
Autophagy - animal
rno04148
Efferocytosis
rno05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
362199 (Vps39)
04148 Efferocytosis
362199 (Vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
362199 (Vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rno04131
]
362199 (Vps39)
Membrane trafficking [BR:
rno04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
362199 (Vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
Lgl_C
KCTD11_21_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
362199
NCBI-ProteinID:
NP_001012186
RGD:
1304858
Ensembl:
ENSRNOG00000008316
LinkDB
All DBs
Position
3:complement(127721076..127758658)
Genome browser
AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVRKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
AKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIVAVLPRYVEIRTLEPRLLVQSIELQRPRFITSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPTLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKQKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
HLIFSYSIWVLRDFPEDGLKIFTEDLPEVESLPRDRVLNFLIENFKALAIPYLEHIIHVW
EETGTRFHNCLIQLYCEKVQNLMKDYLLSLPTGKSPVPAGEEAGELGESRQKLLTFLEIS
SSYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTKMAKEYCHKHYDQNK
EGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPQANLQAALQVLELHYSKLDTTKAINLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNSADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcttttgagccggtgccgatcctggagaagcttccactgcagattgactgc
ctggctgcctgggaggaatggcttcttgttggaaccaagcaagggcatcttcttctctac
aggattcggaaggatgttggttgtaacaggtttgaggtaacactagagaagtccaataag
aacttttccaaaaagatccagcagatccatgtggtttcccagtttaagattctagtcagc
ttgttagaaaacaacatttatgtccatgacttactgacatttcaacaaatcactacagtt
tcaaaggctaaaggagcatcactgttcacctgtgacctccagcacactgagacgggtgag
gaggtgttgcggatgtgtgtggcggtgaggaagaagctgcagttgtacttctggaaggat
agagaattccatgaactgcagggagactttagtgtacccgatgtgcccaagtccatggca
tggtgtgaaaattctatctgtgttggcttcaagagagactactacctgattagggtggat
gcaaaggggtctatcaaagagctcttcccaacaggaaagcagctggagcccttagttgcc
cctctggcagatggaaaagtagccgtgggtcaggatgatctgactgtggtgctcaacgag
gaaggcatctgcactcagaaatgcgccctgaactggacagacatcccggtggccatggag
caccagcctccgtacattgtcgcagtgttgccaagatacgtggagatccgaacacttgaa
ccaaggcttctggtccagagcatagagttgcaaaggccccgcttcattacatcaggggga
tcaaacattatctatgtggccagcaatcattttgtttggagactcattcctgtccccatg
gcaacccaaatccaacagcttctccaggacaagcagtttgaattggctctgcagctagcg
gaaatgaaagatgactcagacagtgaaaagcagcagcaaatccatcacattaagaacttg
tatgccttcaacctcttctgtcagaagcgctttgatgagtccatgcaggtctttgctaaa
cttggcacagatcccacccacgtgatgggcttgtaccccgacctgctgcccacggactac
aggaagcaactgcagtaccccaacccgctgcccacactctctggtgctgagctggagaag
gctcacttagcgctcattgactacctgacacagaagcggagccagttggtaaagaagctg
aatgactcggaccaccagtccagcacctccccactcatggagggcactcccaccatcaag
tccaagcagaagctgctgcagatcatcgacaccactctactcaagtgctacctccataca
aatgtggccctggtggctcccttgctgcgcctggagaacaaccactgtcacatcgaggag
agtgagcatgtgctgaagaaggctcacaagtacagtgagctgatcatcctgtatgagaag
aaggggctccatgagaaagctctgcaggtgctagtggaccagtccaagaaagcaaactca
cctctgaaaggccatgaaaggacggtgcagtacctacagcatttgggcacagaaaaccta
catttgattttttcctactcgatctgggtgctgagagacttcccagaagatggcctgaag
atattcactgaagacctcccggaggtggagtctctgccacgagatcgcgtgctcaacttc
ttgatagagaatttcaaggccctggccattccttacctggagcacatcatccacgtgtgg
gaggagacaggcacacggttccacaattgcctaatccagctgtactgtgagaaagtgcag
aatctgatgaaagactacctcctgtcactacccacaggcaaaagtccagtccctgctggc
gaggaagcaggagaactgggagaatcccgacagaagctgctcacgttcctggagatttcc
agctcctacgatcccggccggctcatctgtgattttcccttcgatggcctcttagaagaa
agagctctcctgttgggacgcatggggaagcacgaacaagctctcttcatctatgtccat
gtcttgaaggacacaaagatggctaaggagtactgccacaaacactacgaccaaaacaaa
gaaggcaacaaagatgtatatctgtccctgcttcggatgtacctgtcgcctccaagcatt
cactgcctggggccaatcaaactagagctcctggagccacaggccaacctccaggctgcc
ctgcaggtcctagagctgcactacagcaaattagacaccaccaaggcaatcaaccttctg
ccagcaaacactcagatcaatgacatacgaatcttcctagaaaaggtcttagaagaaaat
gcacaaaagaaacggttcaatcaagtgcttaagaatcttctccatgcggagtttctcagg
gttcaggaagagcggattttacaccagcaggtgaagtgcatcatcactgaggagaaggtg
tgcatggtgtgcaagaagaagattgggaacagtgcatttgcaagataccccaatggagtg
gttgtgcactacttctgctccaaagaagttaactcagccgacacctga
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