Rattus norvegicus (rat): 362557
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Entry
362557 CDS
T01003
Symbol
Ndc1
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03013
Nucleocytoplasmic transport
rno05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
362557 (Ndc1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
362557 (Ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
362557 (Ndc1)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
362557 (Ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
DUF5134
VCA0040-like
Motif
Other DBs
NCBI-GeneID:
362557
NCBI-ProteinID:
NP_001020194
RGD:
1560173
Ensembl:
ENSRNOG00000010620
UniProt:
Q6AXN4
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All DBs
Position
5:127384172..127431093
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AA seq
673 aa
AA seq
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MATAASGPCAGGSPRDILWRVLGWRIVTSVVWSVLLLPVCITAFIVFSSIDLFHPIQWLS
DSLNEFYSSQVIFYLLLLAVVIIIISIFNVEFYTVVPSIPGSRLALIARILHPQQLTHSF
IHAVMGMAVAWCAAIMTKGQSRSLVVPCTGTESLDSPAAQTCMNEYHLFFLLSGAFMGYS
YSLLYFINNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFMVRNFCIVYYFFGHIPK
AWISTALDLRTDEQAHRPLDTIGGLLNVSLLYHVWLCGVFLLMTWYISWILFKIYATEAY
MFPVQPPFAEESDECLPKVLNSNPPLIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHP
HNWTAISRECLSLLNDMTQKLVLYQEAAATNGRMYSSYSVEPKRLSSPEETAFQTPKPSQ
MPSVPPLVKTSLFSPKLSTPDGSSPFGTPFGSSVVNRMAGIFDVNTCCGSPQSPQLVRRG
PRLWTHTSDQQVSAVSNPSPCASVTAEGKTVRQPSVLYSWIQNKREQIKNFLSKRVLIMY
FFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQEA
VDKYFKLPHASSKPPRTSGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQASAE
HQKRLQQFLEFKE
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggccacggctgcgagcgggccctgcgccggcgggtcaccgcgggacatcctttggcgc
gttttgggctggaggatagttactagtgtcgtttggtcagtgctgcttctccctgtctgc
atcacagcatttatagtcttcagcagcatcgatttattccaccctatacagtggctgtca
gattctctcaatgagttctatagttcccaagtaatcttttacctcctgctgctggccgtg
gtcattataataataagtattttcaatgtggagttctatacagttgtgccctccataccc
ggctcccgactggcgctgatagcacggatccttcaccctcagcagctcacgcactccttc
atacacgctgtgatgggaatggcagtggcttggtgtgcggccatcatgaccaagggccag
tccaggtctctggtagttccctgcactggaacggagagcttagatagccctgctgctcaa
acctgcatgaatgaatatcatctgtttttcctactgtctggagcattcatgggctatagc
tatagtcttctgtatttcattaacaacatgaattatcttccgtttcctattatacagcag
tacaaatttttgcgtttccggagatctctcctcttactagttaaacatagctgtgtggaa
tccctgttcatggtcagaaatttctgcattgtatattatttttttggtcatattcccaaa
gcatggattagcactgctctggaccttcgcacagacgagcaggcccacaggcctcttgac
acgataggcggtctcctgaacgtctcattgctctaccatgtctggctgtgtggtgtcttt
ctcttgatgacttggtatatctcatggatactcttcaaaatctatgccacagaggcttat
atgttccctgttcagccaccatttgcggaagaatcagatgaatgccttcctaaagtctta
aatagcaatcccccactcatcataaagtatttggccttacaggacctgatgttgctttct
cagtattctccttctcgaaggcaagaagttttcagcctcagccaaccaggtggacatccc
cacaattggactgctatttcgagggagtgtttgagtcttttaaatgatatgactcagaag
ctggttctctaccaagaagctgctgctacgaatgggcggatgtattcctcatactcagtg
gaacccaagagactgagttctccagaagaaactgcttttcagactccaaaacctagccag
atgccttccgtgccgccattagttaaaacctcattgttttctccaaaattaagtacacct
gacggttcaagtccttttgggactccgtttggctccagtgtagtgaaccgaatggctgga
atttttgatgtaaacacctgctgtggatctccccagagtcctcagcttgtcagaagaggg
ccgagactgtggactcacacttctgatcagcaagtgtctgcagtctctaatccctctcct
tgtgcctctgtcactgctgagggcaagacagtgaggcagcccagtgtgctctactcgtgg
attcagaataaacgggagcagattaagaatttcttgtcgaaacgggtgctgataatgtac
tttttcagtaagcatccagaggcctccattcaggctgttttttcagatgcccaaatgcat
atttgggctttagaaggtctgtctcacttagtagcagcatcatttacagaagatagattt
ggagttgtccagaccacgctcccagctatccttaatactttgctgactctgcaggaggct
gttgacaaatacttcaagctgccccatgcttctagtaaaccaccccgaacttcaggaagc
ctcgtggacacatcctacaaaacattaagatttgctttcagggcctcactgaaaactgct
atctaccgtataaccaccacgtttggtgaacatctgaatgctgtgcaagcatctgcagaa
catcagaaaagacttcaacagttcttggagttcaaagaatag
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