Rattus norvegicus (rat): 362584
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Entry
362584 CDS
T01003
Symbol
Col9a2
Name
(RefSeq) collagen alpha-2(IX) chain precursor
KO
K08131
collagen type IX alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04151
PI3K-Akt signaling pathway
rno04510
Focal adhesion
rno04512
ECM-receptor interaction
rno04820
Cytoskeleton in muscle cells
rno04974
Protein digestion and absorption
rno05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
362584 (Col9a2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
362584 (Col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
362584 (Col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
362584 (Col9a2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
362584 (Col9a2)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
362584 (Col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
rno00535
]
362584 (Col9a2)
Proteoglycans [BR:
rno00535
]
Extracellular matrix (ECM) proteoglycans
Others
362584 (Col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
362584
NCBI-ProteinID:
NP_001102145
RGD:
1307029
Ensembl:
ENSRNOG00000011502
UniProt:
D3ZNT5
A6IS03
LinkDB
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Position
5:139892798..139910131
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AA seq
688 aa
AA seq
DB search
MTALPAPRSLLLFLQVLWLALAQIRGPPGEPGLPGPPGPPGVPGSDGIDGDKGPPGKVGP
PGSKGEPGKPGPDGPDGKPGIDGLMGAKGEPGPMGTPGIKGQPGLPGPPGLPGPGFAGPP
GPPGPVGLPGEIGTPGPKGDPGPEGPSGPPGPPGKPGRPGTIQGLEGSADFLCPTNCPAG
VKGPQGLQGVKGHPGKRGILGDPGRQGKPGPKGDVGASGEQGIPGPPGPQGIRGYPGMAG
PKGEMGPRGYKGMVGSIGAAGPPGEEGPRGPPGRAGEKGDVGSQGARGPQGITGPKGTTG
PPGIDGKDGTPGIPGMKGSAGQVGRPGSPGHQGLAGVPGQPGTKGGPGDKGEPGQQGFPG
ISGPPGKEGEPGPRGETGPQGIMGEKGDQGERGPVGQPGPQGRQGPKGEQGSPGIPGPQG
LPGIKGDKGSPGKTGPRGGVGDPGVAGLPGEKGEKGLSGEPGLKGQQGVRGEPGYPGPSG
DAGAPGVQGYPGLPGPRGLVGDRGVPGQPGRQGVVGRAASDQHIVDVVLKMIQEQLAEVA
VSAKREALGATGMVGLPGPPGPPGYPGKQGPNGHPGPRGIPGIVGAVGQIGNTGPKGKRG
EKGDQGEMGRGHPGMPGPPGIPGLPGRPGQAINGKDGDRGSPGAPGEAGRPGRPGPVGLP
GFCEPAACLGASAYTSARLTEPGSIKGP
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccttgccagcgccccgcagcctcctccttttcctccaggtgctgtggctcgcc
ctggctcagatcagaggtccaccaggggagccgggtcttccagggccaccagggccacca
ggagtgcctggttcggatggcatcgacggtgacaaggggcctccaggtaaagttggtcct
ccgggatccaaaggagagcctggcaaaccggggccagatggtccagatgggaagcctggc
attgatggtttaatgggagccaagggagagcctggccccatgggaacccctggaatcaag
ggccagcctgggctcccagggccccctggcctgccgggccctggttttgctggacctccg
ggaccacctggacctgttggcctccctggtgagattggaaccccaggccccaagggggat
ccagggccagagggaccatcagggcccccaggaccccctgggaaaccaggccgaccagga
accatccagggcctggaagggagtgcggatttcttgtgtccaaccaactgtcctgctggt
gtgaaaggtccccagggtctgcaaggagtgaagggccatccaggcaaacgggggattctg
ggtgatcctggtcgccaggggaagccgggccccaagggagatgtgggtgcctctggagaa
caaggtatccctggaccaccgggtccccaaggcatcaggggctacccaggcatggcagga
cccaagggagagatgggtcctcgtggatataaaggcatggtgggctccatcggggctgct
gggccaccgggtgaagagggcccaagggggccaccaggccgagcgggtgagaagggggat
gtggggagccaaggtgcccgaggaccccaggggataacaggcccaaagggaacaactggt
ccaccaggcattgatggcaaggatgggaccccgggcatacctggcatgaagggcagtgca
ggacaggtgggacggccaggaagcccaggccaccagggcttagcgggtgtgccaggtcag
cctggaacaaaaggaggccccggagacaagggtgaacccggccagcagggcttcccggga
atctctggtccccctgggaaagaaggggagccagggcctcgaggagaaactggtccacag
ggcatcatgggagagaagggtgaccagggtgagagagggccagtggggcagccaggccct
caaggacgacagggccccaagggagagcagggatctccaggaattccaggaccccaaggc
ttgccaggcatcaaaggagataagggttccccagggaagaccgggccccgaggtggagtg
ggtgacccgggggtggccggcctcccaggagagaaaggagagaagggcctgtcaggcgag
ccagggcttaagggacagcaaggagttcgtggagagccgggctaccctggccctagcgga
gatgctggtgccccaggagtgcagggctatcctgggcttcccgggccccgaggactggtg
ggagatcgaggcgtgccaggacaaccggggagacagggtgtggtgggccgagctgccagt
gaccagcacatcgtggatgtggtgctgaagatgattcaagagcaacttgcagaggtagct
gtgagtgccaagcgagaagccctgggtgcaacagggatggtgggccttccaggacctcct
gggccccctggatatccaggcaaacagggacccaatgggcaccctggcccccgaggcatt
cctggcattgtgggagctgtgggtcagattggcaacactggacccaagggaaagcgtgga
gagaagggagatcaaggagaaatgggacgtggccatcccgggatgcctgggccaccaggg
atcccaggtcttcctggccggcctggccaggccatcaacggcaaggatggagacagaggg
tccccaggggccccaggagaggctgggcggcctgggcggccgggcccagtggggctccca
ggcttttgtgagcctgctgcctgcttgggagcctcagcctatacctctgctcgcctcacg
gagcctgggtctatcaaggggccatga
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