Rattus norvegicus (rat): 363000
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Entry
363000 CDS
T01003
Symbol
Prpf40b
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B
KO
K12821
pre-mRNA-processing factor 40
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
363000 (Prpf40b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rno03041
]
363000 (Prpf40b)
Spliceosome [BR:
rno03041
]
Complex A
U1 snRNP components
U1 related factors
363000 (Prpf40b)
Complex B
363000 (Prpf40b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
RhoGAP-FF1
WW_2
DTW
Motif
Other DBs
NCBI-GeneID:
363000
NCBI-ProteinID:
NP_001128055
RGD:
1565411
Ensembl:
ENSRNOG00000052539
UniProt:
A6KCE7
LinkDB
All DBs
Position
7:132271469..132332913
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AA seq
867 aa
AA seq
DB search
MMPPPFMPPPGLPPPFPPMGLPPMSQRPPAIPPMPPGILPPMLPPMGAPPPLTQIPGMVP
PMMPGMLMPAVPVTAATAPGADTASSAVPGTGPPRALWSEHVAPDGRIYYYNADDKQSVW
EKPSALKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQESRWTRPKDLDDLEALVKQESAG
KQQTQQLQTLQPQPPQPDPPPIPPGPIPVPMALLEPEPGRSEDCDVLEAAQPLEQGFLQR
EEGPSSSTGQHRLPQEEEEAKPEPERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAM
KMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTS
TTRYRRAEQTFGDLEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILD
GMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMDKEDALICFEEHIRALEREEEEERERA
RLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLD
LFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKL
TFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSA
FEQITLESERIRLFREFLQVLETECQHLHTKGRKHGRKGRKHHRKRSHTPSGSESDEEEL
PPPSLRPPKRRRRNPSESGSEPSSSLDSVESGGAALGGPGSPSSHLLLGSDHGLRKTKKP
KKKTKKRRHKSTSPDSETDPEDKAGKESEDREQEQDREPRQAELPNRSPGFGIKKEKTGW
DTSESELSEGELERRRRTLLQQLDDHQ
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgatgccaccacccttcatgccccctccagggctcccacctccttttcctccgatgggg
ctcccccctatgagtcagagacctccagccatcccccccatgccacctggcatattgccc
ccaatgcttccaccaatgggggcaccgcctccacttacacagataccaggaatggtccct
ccgatgatgccggggatgctgatgccagccgtgcctgtcactgcagcgacggctccgggt
gcggacaccgccagctctgctgtgcctggcacaggccctccgagggccttatggagtgaa
cacgtggcccctgacgggcgcatctactactacaatgcagatgataagcaatccgtgtgg
gagaagcccagcgcactcaagtctaaagccgagctgctactgtcccagtgtccctggaaa
gagtataaatcagacacaggaaagccttactactacaacaaccagagtcaggagtcccgt
tggacccgacccaaggacctggatgacctggaagccctagtcaaacaagagtctgcagga
aaacagcagacccagcaactacagacactacagccacaaccacctcagcctgaccctcca
cctatacctccgggtcccatcccagtgcccatggccctcctggaacctgaaccaggtcga
agtgaagactgtgatgtgctggaggctgcccaacccttggagcagggcttcctgcagcgg
gaggagggccccagcagttctactggacagcatcggctaccacaggaagaggaggaagct
aagccagaaccagagagatcgggcctcagttggagcaaccgggagaaggcaaagcaggca
ttcaaagagctgctaagggacaaggctgtcccttccaatgcttcctgggaacaggccatg
aagatggtagtcactgacccacgttacagtgccttgcccaaactgagtgagaagaagcag
gcgtttaatgcttataaggctcagcgggagaaagaggagaaagaggaggcccggctgaga
gccaaggaggccaagcagactctgcagcatttcctggagcagcatgaacgcatgacctcc
accacccgctaccggcgggcagaacagacttttggggacctggaggtctgggctgtggtc
cctgagagggatagaaaagaagtttatgatgatgtcctcttcttcctggccaagaaggag
aaggaacaagccaagcagctccggcgtcgaaacatccaagccctgaagagcatcctggat
gggatgagtagtgtcaacttccaaaccacatggtcccaggcccagcagtacctcatggat
aaccccagctttgctcaggaccagcagctgcagaacatggacaaagaagatgcactcatc
tgctttgaggagcacatccgagctttggagagagaggaggaggaagagcgggaacgcgcc
cggcttcgggaacggcgccagcagcggaagaatcgggaggcttttcagaccttcctggac
gagctgcatgagacagggcagctgcactccatgtccacctggatggagctgtacccagca
gtcagcaccgatgttcgctttgccaacatgctgggccagccgggctcgactcctctggac
ttgttcaagttctatgtggaggagttgaaggctcggttccacgatgagaagaaaatcata
aaggatattcttaaggaccggggcttctgtgtggaggtgaacacagcctttgaggacttc
gcccacgtcataagctttgacaagagggctgctgcgctggacgcaggcaacatcaagctg
accttcaacagtctgctggaaaaagcagaggcacgggagagggaacgggaaaaggaggag
gcccgaaggatgcggcgcagagaagctgcctttcgaagcatgctgaggcaggccgtgcct
gctctggagctgggcactgcctgggaagaggtccgtgagcgctttgtgtgcgactcagcc
tttgagcagatcaccctggagtcggagcggatccggctctttcgagagttcctgcaggtg
ctggagactgaatgccagcacctccacaccaaaggccgaaagcatggcagaaagggcagg
aaacaccatcgcaagcgttcgcacaccccctcaggctctgagtcagatgaagaggagctg
cccccaccatccctccggccccccaagcggaggcggcggaacccttcagaatctggctct
gagccttcctcctcacttgattcagttgaaagtgggggtgctgcccttggaggaccaggc
tccccatcttcccaccttcttcttgggtcagatcatggtcttcggaaaaccaagaaacca
aaaaagaaaactaagaaaagaagacacaagtcgaccagtccggacagtgagacggacccc
gaagacaaagccggtaaggagagtgaagacagagaacaggaacaggacagggaaccccgg
caggcagagctccctaaccgttccccaggcttcggaatcaagaaggagaagacaggctgg
gacacatcggaaagcgagctgagtgagggggagctggagaggcgaaggcggacactccta
caacagctggacgaccaccaatga
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