Rattus norvegicus (rat): 363278 Help Entry 363278            CDS       T01003                                  Symbol Atg16l1 Name (RefSeq) autophagy-related protein 16-1   KO K17890   autophagy-related protein 16-1 Organism rno  Rattus norvegicus (rat) Pathway rno04136   Autophagy - other rno04140   Autophagy - animal rno04621   NOD-like receptor signaling pathway Brite KEGG Orthology (KO) [BR:rno00001]  09140 Cellular Processes   09141 Transport and catabolism    04140 Autophagy - animal     363278 (Atg16l1)    04136 Autophagy - other     363278 (Atg16l1)  09150 Organismal Systems   09151 Immune system    04621 NOD-like receptor signaling pathway     363278 (Atg16l1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:rno04131]     363278 (Atg16l1)    03029 Mitochondrial biogenesis [BR:rno03029]     363278 (Atg16l1) Membrane trafficking [BR:rno04131]  Autophagy   Autophagosome formation proteins    Atg12 conjugation proteins     363278 (Atg16l1)  Others   Specific organelles associated proteins    Auto phagosome     363278 (Atg16l1) Mitochondrial biogenesis [BR:rno03029]  Mitochondrial quality control factors   Mitophagy factors    Autophagy-related proteins     363278 (Atg16l1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  ATG16 WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_RIG_2nd ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_IFT122_1st WD40_RFWD3 NBCH_WD40 eIF2A Beta-prop_DCAF12 Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_WDR19_1st KASH_CCD Beta-prop_Vps41 APEH_N TolB_like Fez1 Motif Other DBs NCBI-GeneID:  363278 NCBI-ProteinID:  NP_001102279 RGD:  1310631 Ensembl:  ENSRNOG00000017913 UniProt:  D3ZFK6 LinkDB All DBs Position 9:95869839..95905354 Genome browser AA seq 607 aa AA seqDB search MSSGLRAADFPRWKRHIAEELRRRDRLQRQAFEEIILQYTKLLEKSDLHSVLTQKLQAEK HDVPNRHEISPGHDGAWNDSQLQEMAQLKMKHQEELTELHKKRGELAQLVIDLNNQMQQK DKEIQTNEAKIAECLQTISDLEADCLDLRTKLQDLEVANQTLKDEYDALQITFTALEEKL RKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI EVIVDETSDHTEETSPVRAISRAATKRLSQPAGGLLDSITNIFGRRSVSSIPVPQDVVDT HPASGKDVRVPTTASYVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKG SLSGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDN ARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSES VVREMELLGKITALDLNPERTELLSCSRDDLLKIIDLRTNAIKQSFSAPGFKCGSDWTRV VFSPDGSYVAAGSADGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKGSR AVLWAQP NT seq 1824 nt NT seq  +upstreamnt  +downstreamnt atgtcgtcgggcctccgcgccgcagactttccccgctggaagcgccacatcgcggaggaa ctgaggcgccgggaccggctgcagaggcaggcgttcgaggagatcattctgcagtatacc aagttgctggagaagtcagatcttcattcagtattgacccagaaactacaggctgaaaag cacgacgtaccaaataggcatgaaataagtcctgggcacgatggtgcatggaatgacagt cagctacaagaaatggcccagttgaagatgaaacaccaggaagagctgactgaactgcac aagaagcgtggggagttagctcagttggtgattgacctgaataaccagatgcagcagaag gacaaggagatacagacgaatgaagcaaagattgcagagtgtttacagaccatctctgac ctggaggcagactgcctggacctgcgcaccaaactgcaggaccttgaggtagccaaccag accctgaaggatgagtatgatgccctgcagattacttttactgccctagaagagaaactg aggaaaactactgaggagaaccaggaactggtcaccaggtggatggctgagaaggcccaa gaagccaatcgccttaatgcggagaatgagaaggactccaggaggcgacaagcacggttg cagaaggagcttgcagaagcagcaaaggaacctctacctgtcgaacaggatgatgacatt gaagtcattgtagatgagacctcagatcacacagaagagacctctcctgtgcgagccatc agcagagcagctactaagcgactctcgcagcctgctggaggccttctggattctatcact aatatctttgggagacgctctgtctcttccatcccagtcccccaagatgtcgtggacact catcctgcttctggtaaagatgtgagagtcccaactactgcctcgtatgtctttgatgca catgacggagaggtcaatgcagtacagttcagtccaggctcccggttactggccactgga ggcatggaccgcagggttaaactttgggaagcattcggagataaatgtgaattcaagggc tccctgtctggcagcaatgcgggaattacaagcattgaatttgatagtgctggagcttac ctattagcagcttcaaatgattttgcaagccgaatctggactgtggatgattatcgatta cggcacacacttaccggccacagcgggaaagttctctctgccaagttcctgctggacaat gcacggatagtctcaggaagtcatgaccggaccctcaaactctgggatctccgcagcaaa gtctgtatcaaaacagtgttcgcagggtccagctgcaatgacattgtttgcactgagcaa tgtgtaatgagtggacattttgacaagaaaattcgtttctgggatatccggtcagagagt gtggtccgagagatggaactgttagggaagatcactgctctggacttaaaccccgagagg actgagctcctgagctgctcccgtgatgacctgctaaaaatcattgacctgcggacaaac gccatcaagcagtcattcagtgcacctggattcaagtgtggctctgactggacccgagtt gtcttcagccctgatggcagttacgtggcagcaggctcagctgacggctctctttatgta tggagtgtgctcacggggaaagtagagaaggttctctccaagcagcacagctcttctatc aatgcggtggcgtgggccccctctggcttacatgttgtcagtgtggacaaaggaagcaga gctgtgctatgggcacagccttga

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