Rattus norvegicus (rat): 363458
Help
Entry
363458 CDS
T01003
Symbol
Col4a6
Name
(RefSeq) collagen type IV alpha 6 chain precursor
KO
K06237
collagen type IV alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04151
PI3K-Akt signaling pathway
rno04510
Focal adhesion
rno04512
ECM-receptor interaction
rno04820
Cytoskeleton in muscle cells
rno04926
Relaxin signaling pathway
rno04933
AGE-RAGE signaling pathway in diabetic complications
rno04974
Protein digestion and absorption
rno05146
Amoebiasis
rno05165
Human papillomavirus infection
rno05200
Pathways in cancer
rno05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
363458 (Col4a6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
363458 (Col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
363458 (Col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
363458 (Col4a6)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
363458 (Col4a6)
09154 Digestive system
04974 Protein digestion and absorption
363458 (Col4a6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
363458 (Col4a6)
09162 Cancer: specific types
05222 Small cell lung cancer
363458 (Col4a6)
09172 Infectious disease: viral
05165 Human papillomavirus infection
363458 (Col4a6)
09174 Infectious disease: parasitic
05146 Amoebiasis
363458 (Col4a6)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
363458 (Col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rno04147
]
363458 (Col4a6)
00536 Glycosaminoglycan binding proteins [BR:
rno00536
]
363458 (Col4a6)
Exosome [BR:
rno04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
363458 (Col4a6)
Glycosaminoglycan binding proteins [BR:
rno00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
363458 (Col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
363458
NCBI-ProteinID:
NP_001414189
RGD:
1589724
Ensembl:
ENSRNOG00000056772
UniProt:
A0A0G2K601
LinkDB
All DBs
Position
X:complement(109554945..109905987)
Genome browser
AA seq
1690 aa
AA seq
DB search
MHPGLWLFLVSLCLTKELAEAGQKSYRQPCGGQDCSGACACSPEKGARGHTGPIGTQGPA
GPEGFAGPTGLSGLKGERGSPGRLGPYGPKGDKGPIGVPGFVGISGIPGHPGQPGPRGPP
GLDGCNGTQGAVGFPGTDGYPGVLGPPGLPGHKGAKGEPASFQGSIIGMKGDPGLPGLHG
ITGPSGSPGSPGDAGPIGPPGFQGPPGPPGLPGPDGNMGLGFQGEKGIKGDVGLPGPAGP
PPSTGELEFMGFPKGEKGSKGEPGPPGFPGRSGLPGVPELGSIGEKGERGILGLPGPRGP
VGSEGIQGYPGKQGKKGTSGFPGTNGFPGIKGEKGSIGVRGPDSFTDAEGTVISGFPGDP
GVPGLPGLRGDEGIQGQRGPAGTAGLPSLTGLPGALGPQGSPGLKGDRGNSGRTTFGEAG
LPGRVGLPGLPGLPGPSGPPGRTFVSGPLLSIEPGLPGLQGEQGLKGHQGIKGVKGDSGF
CACEGGAPNIGPHGESGLPGIQGPIGLRGIKGTRGDPGSRGASGPTGTPGLFGPRGQTGL
KGKKGEPTVSRGSKMAGDKGDPGPQGIPGLAGAPGKDGIPGLPGFPGTQGDDGSGFPGER
GLPGLPGEKGHDGPTGPRGIGLPGLPGPRGLPGDKGVDGLPGQQGLRGAKGVTLPCIIPG
SYGPSGFPGAPGFPGSKGARGLPGIPGKPGTHGSKGEPGSPGLIHLPGFPGFPGARGEKG
LPGFPGLLGKHGYPGKAGSPGVPGSKGVAGDIFGAENGASGEQGLQGLPGDKGFPGDSGL
PGPKGLSGKSGMLGPKGERGNPGTSGPPGQPGPSGSTDPFGIKGTSGLPGAPGLPGISGH
PGKKGQRGDIGHPGSTGKRGLPGIKGLPGPQGLAGFLGSPGLSGVTGLPGIPGQKGEKGS
SGPVGFPGLPGLPGLPGADGLKGFSGSFGKVGQPGQAGTPGEKGDRGDPGPVGISSPRPP
MLNLWFKGEKGSQGSAGSDGFPGPRGDKGEPGIPGLPGAPGAPGQSNTIKGLSGSPGSPG
SMGRRGLPGLKGSLGIAGFPGIPGKSGSQGLTGTPGPLGATGIPGLKGDQGPTLGISGSP
GPKGQPGELGFKGVKGKDGLVGDRGYPGNKGDSGKVGSAGDPGFPGSPGLKGISGMNGDP
GFPGSSGHVGSIGRPGPSGLIGPKGFPGLPGLHGLNGLPGTKGTHGTPGASITGVPGPAG
LPGPKGEKGMPGIVIGDPGKQGLRGQKGDQGSPGLQGPAGTPGASGISLPSVIAGQPGDP
GQPGLDGERGRPGLPGPPGPPGPSSDQGDPGDSGFPGIPGLQGLKGNQGLPGFSGLSGDL
GLKGMRGEPGLMGTPGKIGPPGDPGFPGMKGKAGPRGFSGPQGAPGHTPIAEARHVPPGP
LGLPGIDGIPGLTGDPGSQGSVGLQGSKGLPGIPGKDGPSGLPGPSGILGDPGLPGLQGP
PGFEGAPGNQGPIGQPGMPGHSVRVGYTLVKHSQSEHVPPCPIGMSQLWVGYSLLFVEGQ
EKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPVGETQI
PQYISRCSVCEAPSQAIAVHSQDITVPQCPLGWHSLWIGYSFLMHTAAGTEGGGQSLVSP
GSCLEDFRANPFIECSGARGTCHYFANKYSFWLTTVEERGQFQEQPVSENLKTGQLHTRV
SRCQVCMKTP
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgcaccctggattgtggctgttcctggtttccttatgcctgaccaaagaactggcagaa
gcgggacagaagtcctatagacagccatgtgggggccaagactgcagtggagcctgtgca
tgctctcctgagaaaggagcaagagggcacactgggccaattggaactcaaggtccagcc
ggtcctgaagggtttgctggtccaactggtttatcagggttgaaaggagaaagaggctcc
ccaggccgtctgggaccatatggacccaaaggagataagggtcccattggagttcctggc
tttgttggcatcagtgggattccgggacacccaggccaaccaggtccaagaggtccacct
ggcctagatggatgtaatggaactcaaggagctgttggatttccaggcactgatggctac
cctggggttttaggaccacctgggctgcctggtcacaaaggtgcaaaaggagaacctgct
tcttttcaaggcagcatcataggaatgaagggggatcctgggctgcctggactgcatgga
atcactggtccatcaggatctcctggatctcctggagatgcaggacccataggaccacca
ggtttccaaggtccaccaggtccccctggacttcctggtcctgatggaaatatggggtta
ggtttccaaggagaaaaaggaatcaagggggatgttggcctccctggccctgcaggacca
cctccatctactggggaactagaattcatgggattccccaaaggggagaaaggttccaag
ggtgaaccagggcctccaggtttcccaggcaggagtggccttccaggtgtcccggaactt
ggatctattggagaaaaaggagaaagggggatccttggattgccaggacctaggggtccc
gtgggttcagaaggaatacaaggatatccagggaaacagggaaagaaggggacttcaggt
tttcctgggactaacgggttcccaggaattaagggtgaaaagggaagcattggtgtgcga
ggcccagacagtttcactgatgcagaaggcactgtgatctcaggttttcctggagaccct
ggtgtgccaggcctcccaggccttagaggagatgaaggcatccagggtcaacgtggccct
gctggcactgctggccttccatcgttaacaggtcttccaggtgccctagggcctcaggga
tctccaggcctgaaaggagaccgagggaactcaggacgtaccacctttggagaagctggc
ctacctggcagagttggtttgccaggtttaccaggcctgcccggcccatcaggcccacct
ggtcgcacatttgtgtctggacccctgcttagcatagagcctgggttacctggcctccaa
ggagaacaaggcctaaaaggacatcaaggcatcaaaggagtaaaaggagactctggcttt
tgtgcttgtgaaggtggtgcccccaacattggaccacatggggaatcaggcctgcctggg
atacaaggtcccattggtctacgtggtattaaagggacaagaggcgatccaggctctagg
ggcgcatctggccccacagggacaccagggctatttggacctagaggtcagactggcctc
aaaggaaagaaaggagaaccaactgtcagtagaggatcaaaaatggcaggggacaaaggt
gaccctggtcctcaggggatcccaggtttggcaggagctccaggcaaggatggaatacca
ggtttaccaggcttcccaggcactcagggagacgatgggtctggcttcccaggtgaaagg
gggttaccaggacttcctggtgaaaagggccatgatggtccaactggaccacgaggaatt
gggctgccaggacttcctgggccccgtggacttcctggagataaaggagtggatgggtta
ccagggcaacaaggcctccgtggagctaaaggagtcaccttgccttgtattatccctggg
tcatacggtccatcaggatttcctggagctcccggattcccaggctctaagggagctcgg
ggcctccctgggattccaggcaagcctggcactcacggaagcaaaggagagcctggaagt
ccagggttaatccatctcccaggatttccaggattccctggagctcgtggggagaaggga
ctgcctggctttcctgggcttctgggaaaacatggctacccgggaaaagctggcagtcca
ggggtaccaggttccaagggagttgctggtgacatctttggtgctgaaaacggtgcttcg
ggggaacaaggtctacaaggattgccaggggacaaaggatttcctggagactctggcctt
ccaggacccaagggtttgagcgggaaatctggtatgctaggccccaagggtgagcgaggg
aaccctggaacatcaggaccaccaggacagccgggaccctcagggtctactgatccattt
ggtatcaagggcacatctggactcccaggagcaccaggccttccaggcatttcagggcac
cctggaaagaagggccaaagaggagacataggtcaccctgggtcaactggaaaacgaggt
ctccctggaataaaaggccttcctggtcctcaagggttagctggcttcctggggagccca
ggtttgtcaggagtcactgggttgccaggcatcccaggccaaaagggtgaaaaggggtcc
tctggaccagtagggtttcctgggttacctggtcttcctggtcttcctggagctgatgga
ttaaagggattttctgggtcatttggaaaggtgggacaacctggacaggctggtactcct
ggagaaaaaggagacaggggagatccagggccagttggcatatctagtccaagacctcca
atgctaaacctttggttcaaaggagaaaaaggatctcaaggttctgctggatcagatgga
tttcctgggcccagaggtgacaaaggagagcctggcatcccagggttaccaggtgcacct
ggagctcctggacagtccaataccatcaaaggactcagtgggagtccaggttcccctgga
tctatgggaagaaggggattacctggcctgaaggggtctctggggattgcaggtttccca
ggaataccaggaaaaagtggttcacagggcctcactgggactcctggccccctgggagca
actggtatcccaggtttaaaaggagatcaaggcccaacacttggcatttctggaagccca
ggacccaagggacagcctggcgaattaggttttaaaggtgtcaaaggaaaagatggacta
gtcggtgatagaggttacccaggaaacaaaggtgacagtggaaaagttggtagtgctgga
gatcctggcttccctggctccccaggacttaaagggatttcaggtatgaatggagaccca
ggcttcccaggttcctctggccatgtgggatcgatcggccgccctggaccctctggctta
ataggacctaaaggattccctggacttcctggtttacatggactgaatggacttccaggc
accaagggtactcacggcactccaggagccagtatcactggtgttcctgggccagctggc
ctgcctggtcccaaaggggaaaagggaatgccaggaattgtcatcggagatccagggaaa
caaggcttaaggggacaaaaaggtgaccaaggttccccgggtcttcaaggtcctgctggt
actcctggagcctcaggcatctccttgccctcagtcatagcaggacagcctggtgaccct
gggcagccaggcctagatggagaacgaggccgcccaggtctcccaggccctccaggtccc
cctggaccatcctcagatcaaggcgatcctggagactctggcttccctggaattccaggc
cttcaagggctcaagggaaaccagggacttccgggtttctctgggctctctggagatcta
gggctaaaaggcatgagaggggaacctggcctcatggggactcctggcaagattgggcca
ccaggagacccaggatttcctggaatgaaggggaaggcggggccaagaggcttttctggc
ccccagggtgctccaggacacacaccaattgctgaagctcggcacgttcctccaggacct
ttgggtctgccaggcattgatggcatcccaggcctcacaggagaccctggatctcaaggc
tctgtgggtctgcaaggttccaaaggcctacctggcatccctggcaaggatggccctagt
gggcttccaggcccatctggaatccttggtgatcctggtctccctggactacaaggacct
ccaggatttgaaggagctccaggaaatcagggccccattgggcagcctgggatgcctgga
cacagtgtgagagtgggctacacattagtaaaacacagtcagtcagaacacgtgccacca
tgccccattggcatgagccagctatgggtgggttacagcttgctgttcgtggaagggcag
gagaaagcccataaccaggatctgggatttgctggctcctgcctgccccgattcagcacc
atgcccttcatctactgcaacatcaatgaagtgtgccactatgccagacgcaatgataaa
tcctactggctctccactactgcccctattcccatgatgcctgtgggcgagacccagatt
ccccagtatatcagtcgctgttctgtatgtgaggcaccctcacaagccattgctgtgcac
agccaggatatcaccgttccacagtgccctttgggctggcacagcctctggattggatac
tccttcctcatgcacactgctgctgggactgagggtggaggccaatccctagtctcccct
ggctcctgtcttgaggacttccgggccaatcctttcatcgagtgcagcggtgcccgtggt
acctgccactactttgccaacaagtacagtttctggctgacaacagtggaggagagaggg
cagtttcaggaacagcctgtgtccgagaatctgaaaactgggcagcttcacaccagggtg
agccgctgccaggtgtgtatgaaaaccccgtag
DBGET
integrated database retrieval system
