KEGG   Rattus norvegicus (rat): 364841
Entry
364841            CDS       T01003                                 
Symbol
Pcdhb1
Name
(RefSeq) protocadherin beta-1 precursor
  KO
K16494  protocadherin beta
Organism
rno  Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:rno00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:rno04515]
    364841 (Pcdhb1)
Cell adhesion molecules [BR:rno04515]
 Cadherins
  Protocadherins
   364841 (Pcdhb1)
SSDB
Motif
Pfam: Cadherin Cadherin_2 Cadherin_C_2 Cadherin_CELSR2_9th Ly49
Other DBs
NCBI-GeneID: 364841
NCBI-ProteinID: NP_001014800
RGD: 1308760
Ensembl: ENSRNOG00000020103
UniProt: F2Z3R5
LinkDB
Position
18:29187848..29190759
AA seq 818 aa
MAAARRKPLQNRQVGSLLLLWCVSVGGAATIRYSVAEEMESGSFVANVAKDLGLEVGKLA
ERGARLVAEGNRLHFRLHRKTGDLFVKEKLDREALCGKADPCVLHFEIILAEPLQSFRVE
VRVFDINDNAPVFLNKEPLLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSANTYFHL
HTRFRSHGPKYAELVLDNPLDREAQPEVNLTITAVDGGSPPKSGTANIRVVVLDVNDHVP
QFSRLVYRAQVPENSDNGSLVVVVTATDLDEGTNKQITYSLAENPEAVLRTFLVDPQTGE
VRLRGPLDFETIETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPPEVTISSVSSPLAEDS
PLQTVVALFTIRDRDVRVGGKITCFLKEDLPFVVKHTFRNSYSLVTDRILDREDVSNYNI
TLVAMDTGPPSLSTETVIEVVISDINDNSPVFQEDSYVLTVRENNSPAVFIGKVHAEDLD
LGENAQVTYSLLPPKSGDLSVFAYISINSDNGKLYALRTMDYEAIQDFQFVVKATDGGFL
SLSSQVTVRVVVLDDNDNRPMILYPLQNGTLPCNDLVPRSAEAGYLVTKVVAVDGDSGQN
SWLSYHLLKATDLGLFSVQRQNGEIRTLRQISERDPMMQKLVILVQDHGQPALSTTASLN
ILLVDGFSEPYLQFQDPSKHSRKVNPTTKYLVISLAVLSFLFLFSVTVIIIIHLYQKIKH
REKFTVQEHFYDDCNFPNNLVQGRGNGSLSQPCPYDMCSATGTGNSEFRFLKRFMPNFPF
PHATGEVKTENDASLPPDSNRNRSRGSEGHARAGDDYM
NT seq 2457 nt   +upstreamnt  +downstreamnt
atggcagctgcgcgcaggaagcctttgcagaacaggcaggtgggctctcttctccttctc
tggtgtgtgtctgtgggaggtgcggccactatccgctattcggtggcagaggagatggag
agcggttcctttgtggctaatgtggctaaggacctagggctagaggtggggaagctggca
gagcgtggggcgcggctcgttgccgagggcaacaggttgcatttccggctccatcgcaaa
actggagatttgttcgtcaaagagaaactagatcgcgaggcactttgtggcaaagctgac
ccgtgtgtgctgcactttgaaattattctcgccgagccgctccagtccttccgggtggaa
gtcagagtatttgatatcaatgacaatgcaccagtttttctaaacaaagagcctctttta
aagattccagagagcaccccattgggctcacgctttccactgcagagtgcccaagatctg
gacgtgggactcaatggtcttcaaaactacaccttgagtgcaaacacctatttccacctg
cacacacgcttccgaagccatggtcccaaatatgcagaacttgtgttggataatccccta
gatagagaggcgcagcctgaagtcaacttgaccattacagcggtggatggtgggtcccct
cccaaatctggcaccgccaacattcgagtggttgtcctggacgtcaatgaccacgtgccc
cagttctctcgcttggtgtaccgtgctcaggtgccagagaacagtgacaatggctctttg
gtggtggtagtgactgccacagacctggatgagggcaccaataagcagataacttactct
ttagctgaaaatccagaagcagttctacggacatttcttgttgacccacaaactggagag
gttcgactccgtgggcccttagattttgaaacgatagaaacatacgacattgacattcaa
gctacagatggagggggtctttctgctcacagcaaagtcttggtggaagtggtggatgta
aacgacaatcctccagaagtgacaatctcctcggtgtccagccctcttgctgaggactct
ccactccagactgtagtggctctcttcactatccgagaccgggatgtgcgagttggaggg
aaaatcacctgtttcctcaaagaagatttgccttttgtagtcaaacacacattccggaat
tcttactcgctagtcactgacagaatcttggatagggaagatgtctccaactataatatc
accctcgttgccatggacactggaccgcccagtctgtccaccgagactgtgattgaagtg
gtaatatctgatataaatgacaattctccagtttttcaggaggattcctatgtcttgact
gtccgtgaaaacaacagtcctgcagtttttattggcaaagtccacgcagaggatctagat
ttgggtgaaaatgctcaagtaacatactccctgctgcctccaaagagtggcgatctgtca
gtctttgcttacatctccataaactcagataacggaaagctctatgcgctaagaactatg
gattatgaggccattcaagactttcagtttgtagtcaaggcaactgatggtggctttctg
tcgttgagtagccaagttactgtcagagtggttgtcctggatgacaacgacaatcgtccg
atgatcctgtacccactgcagaatggcactttgccctgcaatgacctggtgccaaggtct
gcagaggcaggatacctggtgaccaaagtagtggctgttgacggtgattcggggcagaat
tcttggctttcataccatcttcttaaagccacagatcttgggttattttctgttcaaaga
caaaatggggaaatacgtacactgaggcagatatctgagagagaccctatgatgcagaaa
ctggtcattcttgttcaggatcatggccaaccagctctctccactactgcctcactcaac
atcctgctggtggatggcttttcagagccttacttgcagttccaggatccatccaagcat
tctagaaaggtaaatccaaccacaaaatatttggtcatttctctggctgtgctttcattt
ctttttctcttctccgtcactgtgattattattatacacctctaccagaagattaaacac
agagagaaatttacagttcaagagcacttctatgacgactgtaatttccctaacaacttg
gtgcaaggaagaggcaatggctccttatcccagccttgtccatatgatatgtgctcagcc
actggaactggaaacagcgagttccgtttccttaagcgatttatgcccaatttcccattc
ccccatgccactggggaggtgaaaacagagaatgacgccagtttgcctccagattctaat
agaaatcggtctcggggttcagagggccatgccagggcaggagatgactatatgtaa

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