Rattus norvegicus (rat): 365668
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Entry
365668 CDS
T01003
Symbol
Mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
365668 (Mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
365668 (Mtrex)
03041 Spliceosome [BR:
rno03041
]
365668 (Mtrex)
03009 Ribosome biogenesis [BR:
rno03009
]
365668 (Mtrex)
03016 Transfer RNA biogenesis [BR:
rno03016
]
365668 (Mtrex)
Enzymes [BR:
rno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
365668 (Mtrex)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
365668 (Mtrex)
Spliceosome [BR:
rno03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
365668 (Mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
365668 (Mtrex)
Ribosome biogenesis [BR:
rno03009
]
Eukaryotic type
Pre-60S particles
Helicases
365668 (Mtrex)
Transfer RNA biogenesis [BR:
rno03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
365668 (Mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
365668
NCBI-ProteinID:
NP_001029265
RGD:
1305984
Ensembl:
ENSRNOG00000010125
UniProt:
A6I5Q2
A0A8I5ZN47
LinkDB
All DBs
Position
2:complement(46233528..46293827)
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAAGTKKDKEKEKDKWKGPPGPADKAGKRLDTRLQSEPASSG
KNKRDLDVEGTDEPIFGKKPRIEDSINEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SSEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgagcttttcagcgttttcgaggatgattcgaccactgca
gcgggaaccaagaaagacaaagaaaaggagaaagataaatggaaggggccaccggggcct
gcagacaaggccgggaaacgactggataccagattacagtcagaaccagccagtagtggg
aaaaacaagagagatctagatgttgaaggcacagatgaacctatttttggcaagaagccc
aggatagaagactcaattaatgaagatttaagcttggcggacctgatgcccagagtcaag
gtacagtcggttgaaacagttgaaggctgtacacacgaggtcgctcttcctgcagatgag
gattatataccacttaagcctcgagttgggaaggcagcaaaggaatacccgttcattctt
gatgctttccaaagagaagccattcagtgtgttgataacaatcagtctgtgttagtatct
gctcatacatcagcggggaaaaccgtgtgcgctgagtatgctattgcactggctttaagg
gaaaaacagcgtgtaatatttaccagcccaataaaggctctaagtaatcagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggagatgttactattaatccc
acagcatcttgtctggttatgactacagagattttgagaagtatgctgtacagaggctct
gaagttatgcgagaagttgcgtgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtagtatgggaagaaactattattttgcttccagacaatgttcactatgtc
tttctttcggctactattcccaatgctcgacagtttgctgagtggatctgccacctacat
aaacagccctgtcatgtaatttatactgattatcgacctactccattgcaacactacata
tttccagcagggggagatggccttcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaacactgcaatgcaagtacttcgggatgcaggtgatttggccaaaggagac
cagaagggacggaaaggaggaacaaaaggtccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcaacctgtgattatcttcagttttagtaagaaggattgtgaa
gcatacgcccttcaaatgactaaactagacttcaacacagatgaagaaaagaagatggtt
gaagaagttttcaataatgcaattgactgtttgtctgatgaagataaaaagctccctcag
gttgaacatgtacttccacttttgaaacgggggattggtattcaccatggtggtttgctt
cctattttaaaggaaactatagagattctcttttctgaaggattgataaaggccttattt
gccacagagacttttgctatgggaattaacatgccagctagaactgttttatttacaaat
gcccgtaaatatgatgggaaggattttagatggatttcctcaggtgagtacatccagatg
tctggtcgtgcaggaaggagggggatggatgacagagggattgtgattcttatggtcgat
gaaaagatgagcccaacaattggaaaacaactgcttaagggctcagctgatcctctgaat
agtgctttccatctaacgtacaacatggttttgaacttactaagagtagaagaaattaat
cccgagtacatgcttgaaaaatccttctaccagtttcagcattatagagcaattccagga
gttgtagaaaaggtaaagaactcggaagaacagtataataaaatagtaattcccaatgaa
gaaaatgtggtcatctattacaagattagacagcaacttgccaagctgggaaaagagatt
gaagaatatattcataagccaaaatactgcttaccctttctacaaccaggccgtttagta
aaggtgaagaatgaaggtgatgatttcggctggggagtagtggtgaacttctcaaaaaag
tcaaacgtcaagcccaattctggcgaactggatcccttgtatgtggtggaagtgctcctg
cgctgtagcaaggaaagcctgaaaaactccgccacagaggcagcaaagccagcaaagccg
gatgagaagggggagatgcaggttgttccggttttggtgcatctcctgtctgccatcagc
actgttagactctacattccaaaagacctccgccccgtggacaacagacagagtgtccta
aaatccatacaggaagttcaaaagcggtttcccgatggtgttccgttgttagatcctatc
gatgatatgggcattcaagatcaaggactgaaaaaagtcattcagaaagtagaggctttt
gagcatcgaatgtactcgcacccacttcacaatgatcctaatctggaaactgtgtatacc
ctttgtgaaaaaaaggcacagattgcaatagatattaagtctgcaaagagagaactgaag
aaagcaagaactgttctgcaaatggatgaactcaaatgtcgtaagcgtgttctaagaagg
ctgggttttgctacatcttctgatgtcatagagatgaaaggacgggtggcttgtgagata
agcagtgctgacgagctccttctaacagagatgatgtttaatgggctcttcaatgacctt
tcttcagaacaggcgaccgcactgctaagctgttttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcagttagctggaccactccgacaaatgcaggaatgtgctaaa
aggattgcaaaggtttctgcagaggcaaaactggagattgatgaagaaacttacttaagc
tcattcaagcctcacctgatggatgtggtgtacacctgggcaactggggccacatttgcc
cacatctgcaaaatgacagatgtctttgaaggcagtataatccgttgtatgaggcgcctg
gaagaactgcttcgacagatgtgtcaagcagcgaaagccattggaaacacagagctggag
aacaagtttgctgaaggaatcaccaaaatcaagagggatattgtatttgctgccagcctc
tacttatag
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integrated database retrieval system
