Rattus norvegicus (rat): 366016
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Entry
366016 CDS
T01003
Symbol
Nup188
Name
(RefSeq) nucleoporin NUP188 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03013
Nucleocytoplasmic transport
rno05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
366016 (Nup188)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
366016 (Nup188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
366016 (Nup188)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
366016 (Nup188)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
366016
NCBI-ProteinID:
XP_006233967
RGD:
1306022
Ensembl:
ENSRNOG00000025185
UniProt:
F1LRC6
LinkDB
All DBs
Position
3:33957778..34014122
Genome browser
AA seq
1754 aa
AA seq
DB search
MAAAAGGPCVRSSRELWTILLGRSALRELNQIEAELNKHWQRLLEGLSYYRPPSPSSAER
VKANKDVASPLKELGLRVSKFLGLDEEQSVQLLQCYLQEAYRGTRDSLKTVLQDERQSQA
LTLKIADYYYEERTCILRCVLHLLTYFQDERHPYRAEYADCVDKLEKELVLKYRQQFEEL
YRTEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFEMAPSDLLVLTKMFK
EQGFGSRQTNRHLVDETMDPFVDRIGYFSALILVEGMDIESLHKYALDDRRELHQFAQDG
LICQDMDRIMLTLGDIPHHAPVLLAWALLRHTLNPEETSSVVRKIGGTAIQLNVFQYLTR
LLRSLASGGNDCTTSTACMCVYGLLSFALTSLELHTLGNQQDVIDTACEVLADPSLPELF
WGTEPTSGLGIILDSVCGMFPHLLSPLLQLLRALVSGKSTAKKVYSFLDKMSFYNELHKH
KPHDVLSHEDGTLWRRQTPKLLYPLGGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWT
LFTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDLSIADCLLPITSRIYMLLQRL
TTVISPPVNVIASCVNCLTVLAARNPAKVWTDLRHTGFLPFVAHPVSNMTQMISAEGMNA
GGYGSLLMNSEQPQGEYGVTVAFLRLVTTLVKGQLGSTQSQGLVPCVMFVLKEVLPSYHK
WRYSSHGVRELIGCLILELIHAILNLCQETELHSSHTPSLPSLCICSLAYTEAGQTVISI
MGIGVDTIDMVMAAQPRSDGPEGQGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQA
LTQHGAHGNNLIAVLAKYIYHRHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDA
FLTRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSSGSKEFSLGVWSCLH
VVLELIDSQQQDRYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPRFWENLTSPLFGT
LSPPSETSEPSILETCALIMKIICLEIYYVVKGSLDQSLKDTLKKFSSEKRFAYWSGYVK
SLAVYMAETEGNSCTSLLEYQMLVSAWRTLLIVATSHADIMNLTDVAVRRQLFLDVLDGT
KALLLVATSVNCLRLGSMMCTLLLILLRQWKRELGAVDKILGPLTEVLEGVLQADQQLME
KTKAKVFSAFITVLQMKELRVSEIPQYSQLVLNVCETLQEEVIALFDQTRHSLASGSAAE
DKDSMETDDCPRPRHKDQRDGQVCVLGLHLAKELCEVDEDGDSWLQVTRRLPILPTLLTT
LEVSLRMKQNLHFTEAALHLLLTLARTQQGATAVAGAGITQSICLPLLSVYQLSSNGTGQ
TPSTSRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERTLQCLNAVRT
VQSLACLEEADHTVGFILQLSHFRKEWHFHLPQLMRDVQVNLGYLCQACTSLLHSRKMLQ
HYLQNKNGDGLPSAVTPRVHRPSTTTTVLATPSGCSSKQPIADTEASEQRALHTVQYGLL
KILSRTLAALRHFTPDVCQILLDQSLDLAEYNFLFALSFTTPTFDSEVAPSFGTLLATVN
VALNMLGELDKKKESLTQAVGLSTQAEGTRTLKSLLMFTMENCFYLLISQAVRYLRDPAV
HPRDKQRMKQELSSELSTLLSSLSRYFRRGAPSSPAAGVLPSPQGKATSLSKASPESQEP
LIQLVQAFVRHVQR
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgccgccggtgggccgtgtgtgaggagcagtagagaactctggacgattctc
ctcgggaggtcagctcttagagaattgaaccagattgaggcggaactgaacaaacactgg
cagcggttgttagagggtctttcttactacagacctcccagtccaagctcagctgaaaga
gtgaaggctaataaagatgtggcgtcacctctgaaggagctgggcttaagagtcagcaag
ttcttgggtctggacgaggagcagagcgtgcagttgctgcagtgttaccttcaggaggcc
tacaggggtactcgggactcactgaagacagtcctgcaagatgagaggcagagccaggcc
ttaaccctgaagattgcagattactattacgaagaaagaacctgcattcttcgctgtgtc
ttacaccttctgacatatttccaagatgagcgccatccctacagggccgaatatgctgac
tgtgttgacaaactagagaaggagctagttttaaagtaccgacagcagtttgaggagctg
tatagaacagaagcaccgacttgggagacgcatggcaacctcatgactgagcgtcaggtg
tctcggtggtttgttcagtgcctccgggaacagtccatgctactagaaattattttcctc
tattatgcatacttcgagatggcacctagtgacctactggtacttaccaagatgttcaag
gagcaagggtttggtagtaggcagaccaatagacaccttgtggatgaaaccatggatccc
tttgtagatcgcattgggtacttcagtgcccttatcctggtggaaggcatggatattgaa
tccttgcacaagtacgcgctggacgacaggagagagctgcaccagtttgcccaggatggg
cttatctgccaggatatggatcgtataatgttgaccctgggagacattccacaccatgcc
cctgtgcttttggcctgggctctcctccgtcacacactgaacccagaagagaccagcagt
gtggtcaggaagatagggggcacggccatccagctgaatgtgtttcagtacttgactcga
ctgctccggtcacttgccagcggtgggaatgattgcaccacgagtaccgcctgcatgtgt
gtctacggtcttctctcctttgctctcacctcactggagctgcacacactgggcaaccag
caggatgtaattgacacagcatgtgaagtcctggcagacccttctcttccagagcttttc
tggggaacagagccaacctctggtcttgggatcattctggacagtgtgtgtgggatgttt
ccccatctcctttccccacttctacaattgctccgagccctcgtgtcagggaagtccact
gccaaaaaggtgtacagtttcctagataaaatgtctttctacaatgaacttcataagcac
aagccccatgacgtgctctctcacgaggatggaacgctgtggcggaggcaaacgcccaaa
ctcctgtaccctctagggggtcagaccaaccttcgaattcctcagggcactgtgggccaa
gtcatgctggatgatagggcttaccttgtacgctgggaatactcctacagtagctggacc
ctcttcacctgcgagattgaaatgctactccacgttgtctccacagcagatgtgatccag
cattgccagcgggtcaagcccatcattgatttggttcacaaggtcatcagcacagacctg
tccatagcagactgcctgctgcccatcacatcccgcatctacatgctgctgcagcggttg
acgacggtgatctcccctccggtaaacgtcattgcttcttgtgtcaactgcttaactgtc
ttggctgctcgaaatccagcaaaggtctggactgatcttcgtcacacaggttttttgcca
tttgtggcccaccctgtctccaacatgactcagatgattagtgcggaggggatgaacgct
ggagggtatggcagccttctgatgaacagtgagcagccccagggcgagtatggggtcacc
gttgcctttctgcgcctggtcaccactcttgtcaagggacagctcggtagtacccagagc
caaggcctggtgccctgcgtgatgttcgtgttgaaggaggtgcttcccagctatcacaaa
tggcgctacagctctcacggcgtgcgggagctcataggttgcctgattctggagctgatt
catgcaatactgaacctgtgccaagagacagagctgcatagcagccacacgcccagcctg
ccttccctctgcatctgcagcctggcttataccgaggctggacagactgtcatcagcatc
atgggaattggtgtggacaccatagacatggtgatggctgctcagccccgcagtgatggg
ccagaaggtcagggccagggccaactgctgatcaagacagtgaagctggcgttctctgtc
accaacaatgttattcggctgaagcctccttctaatgtggtgtcccccctggaacaggct
ctcacacagcatggtgcccatgggaacaaccttattgctgtcctagccaagtacatctac
cacagacatgacccagctttgccacgcctggccatccagctgctgaaacgtttggccacg
gtagccccaatgtcagtgtatgcttgcctgggcagtgacgcagctgccatccgtgatgcc
ttcctgacccgccttcagagcaagattgaggacatgcgcatcaaagtcatgatcctggag
ttccttacagtggctgtggagacccagccaggcctcatcgagctgtttctgaatctggag
gtgaaggacggcagcagtggctccaaggaattcagccttggcgtgtggagttgtctccat
gtggtgctggagctgatcgactcccagcagcaggatcgatactggtgcccacctctgctg
caccgtgcagccatcgccttccttcacgccctgtggcaggaccgtagggacagtgccatg
ctcgtcctcagaaccaaacccaggttttgggagaatttaacgagtccgctgtttggaact
ctctctcctccttcagagacatctgagcccagcatcctggaaacctgtgccctcatcatg
aagataatatgtttggagatctactatgtagttaagggttcattggaccagtcattaaaa
gatacactcaagaagttttccagtgagaaacgctttgcctactggtcggggtacgtcaag
tctctggcagtttacatggctgagacagagggcaacagctgcacgtccttgctagagtat
cagatgctggtgtccgcctggaggacgcttctcatcgttgctaccagtcacgcagacatc
atgaacttgactgacgtggcagtgcggcgccagctttttcttgatgtgcttgacgggacc
aaagcattactccttgtggcaacatcagtgaactgcctccggctgggctccatgatgtgc
actctgctgctcatcctcctgcggcagtggaagagagagctgggtgctgtggataaaatc
cttgggcccttgacagaggtcctggaaggggtgctccaggcagaccagcagctcatggag
aagaccaaggccaaggtgttctctgcattcatcacagtgttacagatgaaggagcttcga
gtaagcgaaatcccccagtactcccagctggtgctgaatgtctgcgagaccctccaggaa
gaggtgattgcactctttgaccagacccgccacagcctggcatcaggcagtgctgccgaa
gacaaagacagcatggaaacagatgactgccctcggccccggcacaaggaccagcgtgac
gggcaggtatgtgtcctgggactgcatctggcaaaggagctctgtgaggtggatgaggat
ggggactcgtggctgcaggtgacccgaaggctccccattctgcccacgctgctcaccacc
ctggaggtgagcctccgcatgaagcagaacctgcattttactgaggctgcgctgcacctg
ctcctcaccctggctcgcacccagcagggagccacagcagtggctggagctggcatcacg
cagagcatctgcttgcccctcttgagtgtataccagctgagcagcaatggcacaggacag
acacccagcacctctcgaaagtccctggatgccccgtcctggccaggagtttaccgcctc
tccatgtccttgatggagcggttgctcaagactctacgctacaatttcctgactgaggcc
ctagactttgtgggtgtccatcaggagcggaccttgcagtgtctcaatgccgtgaggaca
gtacagagtctagcctgcctggaggaggcagatcacactgtgggcttcatcctacaactg
tcccacttcaggaaggagtggcacttccacctgcctcagctcatgcgtgatgttcaggtg
aacctgggttacttgtgccaggcctgcacttccctcctacacagtcgcaagatgctgcag
cactacctacagaacaaaaatggcgatggcctcccttcggctgtcactccccgagttcat
cggccatccaccaccaccaccgttctggctaccccatctggctgctcctccaagcagcct
attgctgacactgaggcctcagaacagcgagccttacacacagtccagtatggccttctc
aagattctcagcaggaccctggcagccctgcgccacttcactccggatgtctgccagatc
ctgctggaccagtccctggatcttgctgagtacaactttctatttgccctgagtttcacc
actcccacttttgactctgaagtagccccctccttcggaaccctcttggccacagtgaat
gtggccctcaacatgcttggagagctggacaagaaaaaggaatccctcacccaggcggtg
ggcctcagcacacaagcagaagggacccggacattaaagtccctcctgatgttcaccatg
gagaactgcttctatctgctcatctcccaagcagtacgctacctcagggacccggctgtg
cacccccgggacaagcagcggatgaagcaggagctgagctcagagctgagcacattgctt
tccagcctctcacgttacttcagaaggggagcccccagctcccctgctgctggagtcctg
ccctcaccacagggcaaagccacctctctatccaaagctagcccagagtctcaggagcct
ctgatccaacttgtgcaagcctttgtccggcacgtgcagagatag
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integrated database retrieval system
