Rattus norvegicus (rat): 366276
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Entry
366276 CDS
T01003
Symbol
Prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
366276 (Prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rno03041
]
366276 (Prpf6)
Spliceosome [BR:
rno03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
366276 (Prpf6)
Complex C
U5 SnRNP specific factors
366276 (Prpf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
TPR_17
FAT
ARM_TT21_2nd
TPR_CcmH_CycH
T7SS_EccA1_N
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
366276
NCBI-ProteinID:
NP_001073234
RGD:
1307103
Ensembl:
ENSRNOG00000051498
UniProt:
A1A5S1
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All DBs
Position
3:189084465..189148705
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AA seq
941 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRK
HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNITAAQELCEEALRHYEDFPKLWMMKGQIEE
QGELMERAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLW
LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
CENAEPRHGELWCAVSKDITNWQRKIGEILVLVAARIKNTF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaagaagaagccgttcctgggcatgcccgcgccgctgggctacgtaccgggg
ctgggccggggtgccacaggcttcaccacccgatcagacattgggcctgctcgggatgca
aacgaccctgtggacgaccgccatgccccaccagggaagagaactgtgggggaccagatg
aagaaaaaccaggctgctgatgacgatgatgaggatctgaacgataccaactacgatgag
tttaatggctatgctggaagcctcttctcaagtgggccctatgaaaaagatgatgaggaa
gcagatgctatttacgcagctctggataagaggatggatgagagaagaaaagagagaaga
gagcaaagggaaaaagaagagattgagaaataccgaatggaacgtcccaaaatccagcag
cagttttcagaccttaagaggaagttggcagaggtcacagaagaagaatggcttagcatc
ccagaagttggcgatgccagaaacaaacgtcaacggaacccacgttatgagaagctgacc
cctgttcctgatagtttctttgccaaacatttacagactggagagaaccatacttccgtg
gatccccgacaaactcaatttggaggtctgaatactccctacccaggaggcctgaacact
ccatacccaggtggaatgacaccaggattgatgacacctggaacaggggagctggacatg
aggaagattggccaggccaggaataccctgatggacatgaggcttagccaggtatctgac
tcagtgagtgggcagactgttgtggaccccaaaggctatctgacggacctaaactctatg
atcccaacccatggtggcgatataaatgacatcaagaaagcacgactacttcttaaatct
gttcgagaaacaaaccctcatcatccaccagcctggattgcgtcagctcgcctggaagaa
gtcactggaaagttacaagtggctcgaaaccttattatgaaagggacagagatgtgcccc
aagagtgaagatgtctggctagaagcagctaggttacagcctggggacacagccaaggct
gtggtggcacaagctgtccgtcatctcccacagtctgttaggatttacattagagcagca
gaactagaaacagacattcgagcaaagaagcgtgttcttcggaaagcccttgagcatgtt
ccaaactccgttcgattgtggaaagcagctgttgagcttgaagagcctgaagatgctaga
atcatgctgagccgagcagtagagtgctgtcccaccagtgtagagctctggcttgctttg
gcaaggctggaaacttatgaaaatgctcgaaaggtcttaaataaagcacgtgagaacatt
cctacagatcggcacatctggatcaccgctgccaagcttgaggaggccaatgggaacact
cagatggtggagaagatcattgaccgagccatcacgtctcttcgggccaatggtgtagag
attaatcgcgaacagtggatccaggatgctgaggagtgtgacagggcagggagtgtggcc
acgtgccaggccgtcatgcgtgctgtgatcggtatcgggatagaggaggaagatcgcaaa
cacacctggatggaagacgctgacagttgtgtggcccacaatgccctggagtgtgcacga
gccatatatgcctatgccctacaagtcttccccagcaagaaaagtgtgtggttacgagct
gcatactttgagaagaaccatggtaccagggagtctttggaagcgctcttgcagagggct
gtggcccactgccccaaggcagaggtgctgtggctcatgggtgccaagtcgaagtggctg
gcaggggatgtccctgcagcaagaagcatcctggccctggcctttcaggccaaccccaac
agcgaagagatctggctggcggctgtgaagctggagtcagagaacaatgagtacgagcga
gcccggaggctgctggccaaggcccggagcagcgcacccaccgcccgtgtgttcatgaag
tctgtgaagctggagtgggtgctggggaacatcactgccgcacaggagctgtgcgaggag
gctctgaggcactatgaagatttccccaagctgtggatgatgaaggggcagattgaggag
caaggagagctgatggagagggcccgggaggcctacaaccaggggttgaagaaatgtcct
cactccacgccactgtggctcttgctttcccggctagaggaaaagattgggcagctgact
cgtgctcgggccattttagagaaatctcgtctgaaaaacccaaagaaccctgggctgtgg
ttggagtcagtgcggctggagtaccgggcagggctgaagaatattgccaataccctcatg
gccaaggcgctgcaggagtgccctaactctggtatcctgtggtctgaagctgtcttcctt
gaggcaaggccccagagaaagaccaagagtgtggatgccctgaagaagtgtgaacatgac
ccccatgtgcttttagctgtggctaagctgttctggagtgaaagaaagatcaccaaggct
cgggagtggttccatcgcaccgtgaagattgattcagatctgggggatgcctgggccttc
ttctacaaatttgaactacagcatggcactgaggagcaacaggaagaggtgaggaaacgc
tgtgagaatgcagagccccgacatggagagctgtggtgtgctgtgtccaaggatatcacc
aactggcagagaaagattggggaaatcctagtgctggtggccgcccgtatcaaaaacacc
ttctga
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