Rattus norvegicus (rat): 497907
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Entry
497907 CDS
T01003
Symbol
Hmgb1l5
Name
(RefSeq) high mobility group protein B1-like
KO
K10802
high mobility group protein B1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03410
Base excision repair
rno04140
Autophagy - animal
rno04217
Necroptosis
rno04613
Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
497907 (Hmgb1l5)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
497907 (Hmgb1l5)
09143 Cell growth and death
04217 Necroptosis
497907 (Hmgb1l5)
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
497907 (Hmgb1l5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rno03036
]
497907 (Hmgb1l5)
03400 DNA repair and recombination proteins [BR:
rno03400
]
497907 (Hmgb1l5)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rno04147
]
497907 (Hmgb1l5)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
497907 (Hmgb1l5)
DNA repair and recombination proteins [BR:
rno03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
497907 (Hmgb1l5)
MMR (mismatch excision repair)
Other MMR factors
497907 (Hmgb1l5)
Exosome [BR:
rno04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
497907 (Hmgb1l5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
Ets
Phage_tail_S
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
497907
NCBI-ProteinID:
XP_038943758
RGD:
1563668
Ensembl:
ENSRNOG00000038478
LinkDB
All DBs
Position
10:complement(40269191..40270053)
Genome browser
AA seq
211 aa
AA seq
DB search
MGKGDPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYISPKGETKKKFKDPNAPKTPPSAFFLFCSEYRPKIKGEHPGL
SIGDVVKKLGEMWTNTAADDKQPYEKMAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEDDEEDEEDEEEEEEEDEEDDDDE
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggagatcctaagaagctgagaggcaaaatgtcctcatatgcattctttgtg
caaacctgccgggaggagcacaagaagaagcacccggatgcttctgtcaacttctcagag
ttctccaagaagtgctcagagaggtggaagaccatgtctgctaaagaaaaggggaaattt
gaagatatggcaaaggctgacaaggctcgttatgaaagagaaatgaaaacctacatctcc
cccaaaggggagaccaaaaagaagttcaaggacccaaatgcccccaagacgcctccttcg
gccttcttcttgttctgttctgagtaccgcccaaaaatcaaaggcgagcatcctggctta
tccattggtgatgttgtgaagaaactaggagagatgtggaccaacactgccgcggatgac
aagcagccctatgagaagatggccgccaagctgaaggagaagtacgagaaggatattgct
gcctacagagctaaaggaaaacctgatgcagcgaaaaagggcgtggtcaaggctgagaag
agcaagaaaaagaaggaagaggaagacgacgaggaggatgaagaggatgaggaagaggag
gaagaagaagatgaagaagatgatgatgatgaataa
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integrated database retrieval system
