KEGG   Rattus norvegicus (rat): 499431
Entry
499431            CDS       T01003                                 
Symbol
Col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain
  KO
K16617  collagen type XIII alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno04974  Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    499431 (Col13a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:rno00536]
    499431 (Col13a1)
Glycosaminoglycan binding proteins [BR:rno00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   499431 (Col13a1)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 499431
NCBI-ProteinID: NP_001102642
RGD: 1595704
Ensembl: ENSRNOG00000000552
UniProt: A6K424 A0A0G2K2Q8
LinkDB
Position
20:complement(30326744..30466800)
AA seq 739 aa
MVAERARKAAASSNRGPGDLGAPGPGTVALAEQCARLPSPGCCGLLALALCSLALSLLAH
FRTAELQARVLRLESERGEQQMEKAILGRVNQLLDEKWKFYSRRRREAPKMSPGCNCPPG
PPGPTGRPGLPGDKGAIGMPGRVGVKGQPGEKGAPGDAGISIIGPRGPPGQPGTRGFPGF
PGPIGLDGRPGHPGPKGETGLVGPRGQPGPQGQKGEKGQCGEYPHREYPSGTLAALRSNP
IISLKLLPLLNSVRLAPPPVIKRRTFQGEQSQAGIQGPPGPPGPPGPIGPLGHPGLPGPI
GPPGLPGPPGPKGDPGIQGYHGRKGERGLPGMPGKHGAKGAPGIAVAGMKGEPGTPGAKG
EKGATGSPGLLGQKGEKGDAGNAIGGGRGEPGPPGLPGPPGPKGEAGVDGQAGPPGQQGD
KGQPGAAGEPGPTGPKGSKGEPGKGEMVDYNSSINEALQEIRTLALMGPPGLPGQTGPPG
PPGTPGQRGEIGLPGPPGHDGDKGPRGKPGDMGPAGPQGPPGKDGPPGMKGEVGPPGNPG
EKGETGQAGPPGLDGPTGEKGEPGDEGRPGATGLPGPIGLPGFTGEKGEAGEKGDPGAEV
PGPPGPEGPPGPPGLQGIPGPKGEAGLDGSKGEKGSQGEKGDRGPLGLPGTPGPIGVPGP
AGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGL
DAPCPLGEDGLPVQGCWNK
NT seq 2220 nt   +upstreamnt  +downstreamnt
atggtggcggagcgcgcccgcaaagcggcagcctccagcaaccgcggccctggggatctg
ggcgcgccagggcccgggacagtggcgctggctgagcagtgcgctaggctgccgagcccc
gggtgctgcggactgctggctctggcgttgtgctcgctggcgctcagcctgctcgcccac
tttcggacggccgagctgcaggcccgggtgctgcgcctggaatcggagcgcggggaacag
cagatggagaaagctattttgggacgagtcaaccaactgctggacgagaaatggaagttc
tactcgcgcaggcgcagggaggccccgaagatgtctccaggatgtaactgcccaccagga
ccgcctggccccactggaagacctggactcccaggggacaagggtgccatcgggatgcct
ggacgcgtgggtgtcaaaggtcaaccaggcgagaagggtgcccctggagatgcggggata
tccatcatcgggccacgaggcccccctggccagccaggtacccgaggcttccctggattc
ccgggtcccattggtcttgacggcagaccgggccatcccggacctaaaggggagacgggc
ctggtgggtcctcgaggacaaccgggacctcagggacaaaagggagaaaagggtcagtgt
ggagaatacccacaccgggagtatccgagcggcacgctagcagctctgcgctccaacccg
ataatttccctgaagctgctgcctctcctcaattcagtgcggctggctccacccccagtc
attaaaaggcggacctttcagggggaacaaagccaggctggcatccaaggccctccaggg
ccaccgggccccccaggaccaattggccctctgggacacccaggactgccagggcctata
gggccacctggtttacccgggcctcctggaccaaagggagacccagggatccagggctat
catggccgcaagggagagcggggcttgccaggaatgccaggcaagcatggagccaagggt
gctcctgggattgccgtggctgggatgaagggtgagccagggacgccaggagccaagggt
gagaagggtgctacaggctcccctggcctcctggggcagaagggagaaaagggagatgct
ggcaacgccattggaggaggcaggggagagcctggccccccggggctccctgggccccct
gggccaaagggagaagctggtgtcgatggacaggctggtcccccaggacagcaaggagac
aaggggcagccaggagcagctggcgaaccgggaccaactggccccaagggttccaagggt
gaacccggcaagggagagatggtggactacaacagcagcatcaacgaggctcttcaggag
atcaggacgctggccttgatggggcctcctggtcttcctggacaaacaggcccacccgga
cctccagggactccaggccaaaggggggagattggattgccaggccctccaggacacgat
ggggacaaggggcctcgaggaaaaccaggagatatggggcctgctggtcctcaaggaccc
ccaggaaaggacgggcctccaggaatgaagggagaggttggacctccaggaaatccaggg
gagaaaggggagacaggacaagcaggccccccgggtctagacggcccaactggggagaaa
ggagaaccaggtgatgaagggaggcctggagcgacaggattgcctgggcccatcgggctc
ccgggattcacaggagagaaaggagaggctggggagaaaggtgacccaggagcagaggtg
cctgggccgccagggccagagggtcctccaggaccgccgggcctccaaggtattccagga
ccaaagggagaagcaggcctagatggcagtaaaggagagaagggctcccagggagaaaaa
ggagaccgggggcctctgggattgcctggtactccaggaccaatcggggttccaggccca
gccggaccaaagggcgaaaggggcagcaagggagacccagggatgacgggaccaacagga
gcagctgggctgcctggtttacacggaccacccggggacaaaggaaaccggggggagagg
gggaagaagggctctagagggcctaaaggggacaagggggaccaaggagcacctggacta
gacgccccctgcccactgggagaagatggcttaccagtccaaggctgctggaacaagtga

DBGET integrated database retrieval system