Rattus norvegicus (rat): 499723
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Entry
499723 CDS
T01003
Symbol
Col24a1
Name
(RefSeq) collagen alpha-1(XXIV) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04820
Cytoskeleton in muscle cells
rno04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
499723 (Col24a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
499723 (Col24a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rno00536
]
499723 (Col24a1)
Glycosaminoglycan binding proteins [BR:
rno00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
499723 (Col24a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
499723
NCBI-ProteinID:
XP_038959799
RGD:
1565539
Ensembl:
ENSRNOG00000014143
LinkDB
All DBs
Position
2:236872583..237129768
Genome browser
AA seq
1731 aa
AA seq
DB search
MHLGAYRTRHGKVSPTTETKLLLRFTVLCVAWITVRAQGQGIDILQQLGLGGRDVRYASS
VTAVPSLSTPLPQGVHLTEFGVVLTDNAYIESPLVNILPVSLRQPLTVLIGLQSLQVNNA
FLFSIRNNNRLQFGVQLLPKKLIVHVGGKRTVTFDYSIHDERWHSLAITVDHRVVSMFVE
CGKRYFSGETTSEVQTFDPHSVFTLGSMNNSSAHFEGTVCQLDIVPSAVASADYCSHLKQ
QCPRTDASQAERSLSHTEVVPTRYPEHTPLPRGLAGTELTQKRFTEQAPFPKGFDEAELP
RETFTDDSKSISNNTGNGSATVHESHEHQTPRVRLTSFHSENISAVTLPSYRIQAKEITT
KGETNLTLSVPHRLPSEAGMNEEERISPLFPEFNITQHEEAAGLPSPKKASSSIAQTNQD
TVTNLKKAITANLHTNELMEMERILNSTLYKVIHGPSVDNHLELRKEGEFYPDATNPMEN
SYEPQPYEYYYYEDYNAMLDLEYLRGPKGDTGPPGPPGPMGIPGPSGKRGPRGIPGPHGN
PGLPGLPGPKGPKGDPGLSPGQAASGEKGDPGLLGLVGPPGLQGEKGLKGHTGLPGLRGE
QGIPGLAGNVGSPGYPGRQGLAGPEGNPGSKGVRGFIGSPGEAGQLGPEGERGTPGVRGK
KGPKGRQGFPGDFGDRGPAGLDGSPGLVGGIGPPGFPGIRGNVGPAGPVGPPGVPGPMGL
SGSRGPPGIKGDKGEQGVAGEPGEPGYPGDKGAIGSPGPPGIRGKSGPSGQPGDPGPQGP
TGPPGPEGFPGDIGIPGQNGPEGPKGHLGSRGPPGPPGLKGTQGEEGPIGPFGELGSRGK
PGRKGYMGEPGPEGLKGETGDQGDIGKIGETGPVGLPGEVGITGSIGEKGERGSPGPLGP
QGEKGVMGYPGPPGAPGPMGPIGLPGLVGARGAPGSPGPKGQRGPRGPDGLAGDQGGHGA
KGEKGNQGKRGLPGRAGKTGSPGERGVQGKPGLQGLPGSSGDMGPAGEPGPRGLPGDAGL
PGEMGVEGPPGTEGDSGLQGEPGAKGDVGPTGSEGATGEPGPRGEPGAPGEEGLQGKDGL
KGAPGGSGLPGEDGEKGEMGLPGTAGPVGRPGQMGPPGSEGIVGTPGERGRTGKKGDKGQ
TGPVGEAGSRGSPGRVGDSGPKGARGTRGAVGPLGLMGPEGEPGIPGYRGLEGQPGPSGL
PGPKGEKGYPGEDSTVLGPPGPRGEPGPMGERGERGEHGEEGYKGHMGVPGLRGAAGQQG
PPGEPGDQGEQGLKGERGSEGPQGKKGVPGPSGKPGIPGLPGLPGPKGLQGYHGVDGLSG
YPGKPGLLGKQGLPGTTGSPGRTGLAGSPGPQGGKGSSGPPGSPGVPGPKGEQGLPGQPG
IPGQRGQRGTQGDQGRRGEPGLKGQPGEHGNQGLTGFQGFPGPRGPEGDAGIIGIVGPKG
PVGQRGNTGPLGREGIIGPTGGTGPRGEKGFRGETGPQGPRGQPGPPGPPGAPGPRRQMD
INAAIGALIESNSAQQMESYQNTEVTFLSQGTEISKTLAYLSSLLSSIKNPLGTRENPAR
ICKDLLSCQYEVSDGKYWIDPNLGCSSDAFEVFCNFSAGGQTCVSPVSVTKLEFGVGKVQ
MNFLHLLSSEATHIITLHCLNTPRRTGTPADGPELPISFKGWNGQIFEENTLLEPQVLSD
DCKIQDGSWHKAKFLFHTQNPNQLPVTEVQNLPHLRTEQKHYIESSSVCFL
NT seq
5196 nt
NT seq
+upstream
nt +downstream
nt
atgcatttaggagcctacaggacaaggcatggaaaggtctcccccaccacagaaacgaaa
ctgcttcttcgctttactgtactatgtgtggcgtggattactgttcgtgcacagggacaa
ggcatagacattcttcagcaactaggccttggcggcagagatgtaagatacgcatcatcg
gtgacagccgtgccgtcattgtccacaccattacctcagggggtccacttaacggaattt
ggtgtggtcttaacagacaacgcctacatagagtcacctctcgtgaacattttaccagtt
agcctaaggcagccgctgacagtgttgattgggttgcagtcactccaagtgaacaatgca
tttctcttcagcattcggaataacaacaggctgcagtttggcgtgcagctcttacctaag
aaactcatagtgcacgtcggaggaaagcgaacagtaactttcgactacagcatccacgat
gagcgctggcactcattggccatcactgttgaccaccgtgttgtctccatgttcgttgag
tgtgggaagagatattttagtggagagactacttcagaagttcagacctttgaccctcac
agtgtgtttaccttgggaagtatgaataacagctctgcccacttcgaaggaacagtgtgc
cagttggatattgtgccttctgcagtggcatctgctgactattgcagtcacctgaaacaa
cagtgtccccgaacggatgcatcccaggctgagagaagcctttctcatacagaagtggtg
cccaccagataccctgagcacactcccttgcccagaggacttgcaggaacagaattgaca
cagaagagattcacagagcaggctcccttccccaaaggatttgatgaggcagaattgcca
cgggagacattcacggatgatagcaagagcatttcaaacaacacaggtaatggttcggcc
acagtccatgaaagccacgagcaccagacaccaagggttcggttaacctctttccattca
gaaaacatctcagctgtgactctcccaagctacagaattcaagctaaagaaatcaccacc
aagggcgagacaaacttaaccctgtcagtgccgcatcgtctccctagcgaggcaggaatg
aacgaagaggagagaatcagtcctctcttccctgaattcaacatcacccaacatgaggag
gcagctggcctgccctcacctaagaaggcatcatccagcattgcacagacaaatcaagac
accgtgactaacctcaagaaggctatcacggcaaacctacacaccaatgaactcatggaa
atggaacggatcttaaacagcaccttgtataaagtgatacacgggccctcggtggataac
caccttgaactaaggaaggaaggtgaattttaccctgatgctactaatcccatggaaaat
agctatgagccccagccttatgaatattactattatgaggattataacgccatgcttgac
ctggagtatctgagagggccaaaaggagacactggacctcccggtccccctggtccgatg
ggtatcccaggtccctcaggcaagagaggcccgaggggtattccgggaccacatggaaat
cccgggctgcctggactgccaggtccaaagggccccaaaggagatcctggactgtcccca
ggccaagctgcttctggagaaaagggtgacccaggtcttttggggctagtggggccccct
ggtttacaaggtgaaaagggtctcaaaggacacacagggctccccggactccgcggtgaa
caaggaattccgggactcgctggtaatgttggctcgcctggctaccctggcaggcagggt
ttagctggaccagagggtaacccaggctccaaaggtgtccgaggtttcattggctctcct
ggagaggcgggacagctgggacctgaaggagaaaggggcactcctggggtccgtgggaag
aagggtccaaaggggagacagggtttcccaggtgactttggagacagaggccctgctggt
ctggatggcagtcctggtcttgtaggtggcatcggacctcccggctttccaggcattaga
ggaaatgtcggtcctgcaggacccgttggacctccgggagttcctggcccaatgggcctt
tcaggaagtagaggaccacctggaatcaaaggtgataagggtgagcaaggtgtggcaggg
gagccaggagaacccgggtatcctggagacaagggcgccattgggtcaccaggaccacca
gggattagaggaaagtcgggaccttcaggacaaccaggtgacccaggaccacagggacca
actgggcctccaggaccagagggttttccaggagacattgggattcctggacaaaatgga
cctgaaggaccaaagggacatcttggaagcagagggccccctgggcctccaggtctcaaa
ggaactcagggagaagaaggaccaattggaccctttggagaactgggatctaggggaaaa
ccaggtcgaaaagggtatatgggtgaaccagggccagaaggcttaaagggagaaacggga
gaccaaggagatattgggaaaattggcgaaacaggacctgttggtttacctggagaagta
gggataaccggaagcattggcgaaaagggagaacgtggaagtccaggcccacttggtccc
cagggggaaaaaggtgtcatgggttacccaggtcctcctggggctccaggacccatgggc
ccaattggattacctggtcttgttggagcaagaggcgcgcccgggagcccaggtcctaaa
ggacaaagaggacccagaggaccagatggcctcgcaggggatcaaggtggacatggtgcc
aagggtgaaaaaggaaaccaagggaaaagagggcttcctggtcgtgccggtaagactgga
agccctggggagaggggagttcaaggaaaaccaggcttacaaggactccccggcagctca
ggagacatggggcctgccggagaaccagggccgcgaggactgcctggtgatgctggactt
cctggagagatgggtgtggagggacctccgggcactgagggcgactctggcctgcaaggt
gaaccaggtgctaagggagatgttggacctaccggcagcgagggagccactggggagcca
gggccgcgaggagaaccaggagctcctggagaagaaggtctccaaggaaaagatggatta
aagggagctccaggaggaagcggacttcctggagaggatggagaaaaaggagagatgggc
ttaccaggaacagcagggccggtggggagaccaggtcagatgggccctccaggatctgaa
ggaattgtgggaaccccaggagaaagaggtcgaacagggaaaaagggtgataaaggacaa
acaggacccgtgggagaagctggaagcagaggttcccctggacgcgttggggacagtggc
cctaagggtgccagaggaactcgaggtgctgtgggtccattaggattgatgggacctgaa
ggtgaaccaggaatcccaggatacagaggccttgaaggtcagccaggaccctctggattg
ccaggacctaaaggagaaaagggctacccaggagaagacagcacagtcctgggacctcct
gggcctcgaggtgaaccagggccaatgggggagcgaggagagagaggggagcatggggaa
gaaggctataagggccatatgggtgtcccaggactcagaggtgccgcgggacaacaagga
cccccaggtgaaccaggtgaccagggcgaacaaggactgaaaggagagagaggatctgaa
ggtcctcaggggaaaaagggagttcctggtccttctgggaaaccaggcattcccggtctt
ccaggccttccggggccaaaaggcttgcaaggatatcatggagtcgacggcctatcagga
tacccgggaaagcctgggctactgggaaaacaaggacttccgggcaccacgggcagccca
ggaagaacaggactggctggatccccaggtcctcagggaggaaagggttcatcaggccct
ccgggaagccctggtgttccgggcccaaagggtgaacaagggttacctggtcagcctgga
atcccaggccaaagaggtcagcggggaacacaaggagaccaaggacgacgtggagagcct
ggtctgaaagggcagcctggagaacatggcaatcaaggtttgacaggtttccaaggattc
ccgggccccaggggtccagagggggatgctggtatcattggcattgtaggccctaaaggt
cccgttgggcagagaggaaacactggccctcttggcagagaagggataataggcccaaca
ggtggaactggacccagaggtgaaaagggctttagaggtgaaactggtccccaaggacca
agaggtcaaccgggaccccctggtccacctggagcgcccggtccacgaagacaaatggat
atcaatgctgctattggagctctgatagaatcaaattctgcccagcagatggagagttac
cagaacactgaagtgaccttcctcagccaaggtacagagatttccaaaaccctggcctac
cttagcagtctcctgagcagcatcaagaatcctcttggcacacgagaaaacccggcacgg
atctgcaaggatttgctgagctgtcagtatgaggtttcggatggaaaatactggattgac
ccaaatcttggatgctcttcagatgcctttgaggttttctgcaacttcagtgctggaggc
cagacatgtgtatctcctgtttctgtgacaaagttggagtttggagtcggcaaagtacag
atgaactttcttcacttgctgagctcagaagccacccacatcatcacccttcactgtcta
aacaccccgaggcggaccggcacgccggcggatggtccagagttgcctattagtttcaaa
ggatggaatggtcagatttttgaagaaaacactctacttgaacctcaagtcctctcagat
gactgcaagattcaggatggcagctggcacaaggcaaaattcctcttccacacccagaat
cctaatcagcttcctgtaaccgaagtgcaaaatcttcctcatctcagaaccgagcaaaag
cactacatcgaaagcagttctgtgtgctttctctaa
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integrated database retrieval system
