Rattus norvegicus (rat): 499801
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Entry
499801 CDS
T01003
Symbol
Ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04622
RIG-I-like receptor signaling pathway
rno05161
Hepatitis B
rno05162
Measles
rno05164
Influenza A
rno05168
Herpes simplex virus 1 infection
rno05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
499801 (Ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
499801 (Ifih1)
05171 Coronavirus disease - COVID-19
499801 (Ifih1)
05164 Influenza A
499801 (Ifih1)
05162 Measles
499801 (Ifih1)
05168 Herpes simplex virus 1 infection
499801 (Ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rno04054
]
499801 (Ifih1)
Enzymes [BR:
rno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
499801 (Ifih1)
Pattern recognition receptors [BR:
rno04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
499801 (Ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
ResIII
Helicase_C
DEAD
CARD
SWI2_SNF2
Cas3-like_C_2
DUF3638
Motif
Other DBs
NCBI-GeneID:
499801
NCBI-ProteinID:
NP_001102669
RGD:
1560496
Ensembl:
ENSRNOG00000006227
UniProt:
A6HLW0
G3V6W5
LinkDB
All DBs
Position
3:complement(67635924..67683968)
Genome browser
AA seq
1027 aa
AA seq
DB search
MSTVCSAEDSFRNLISIFRPRVKMNIQVEPVLDYLVFLPAETKEQILRKVTTCGNTSAAE
LLLSTLEQGQWPLGWTQMFVEALEHSGNPLAARYVKPSLTDLPSPSSETAHDECLHLLNL
LQPTLVGKLLINDVLDTCSEKGLVTVEDRNRISAAGNSGNESGVRELLRRIVQKENWFST
FLDVLRQTGNDALVQELTGVSCPEESTDLDNASHKDRPAANEPLLPAIDALSLETEAWTI
EDTSPEASFADSSVTTESDTSLAEGSVSCFDESLGHNSNMGRDSGTMGSDSDEDTIMGTK
RASPKPELQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDHLDKKKQACESGK
VIVLVNKVMLAEQLFRKEFNPFLKKWYRIIGLSGDTQLKISFPEVVKSYDVIISTAQILE
NSLLNLESGEDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLKNHKLKKQNKPT
IHLPQILGLTASPGVGAAKKQSEAEKHILNICANLDAFTIKTVKENLSQLKHQIKEPCKK
FVIADDTRENPFKEKLLEIMASIQTYCQKSPLSDFGTQHYEQWAIQMEKKAAKDGNRRDR
VCAEHLRKYNEALQINDTIRMIDAYSHLETFYTDEKEKKFAALNDSDESDDDEASSCHDQ
LKGNVKKSLKLDETDEFLMNLFFDNKKMLKKLAENPKYENEKLIKLRNTILEQFTRSEES
SRGIIFTKTRQSTYALSQWIMENEKFAEVGVKAHHLIGAGHSSEVKPMTQTEQKEVISKF
RTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVTSSGS
GVTEREIVNDFREKMMYKAINRVQNMKPEEYAHKILELQVQSILEKKMKVKRSIARQYNS
DPSLITLLCKNCSTLVCSGENIHVIEKMHHVNMTPEFKGLYIVRENKALQMKFADYQTNG
EIICKCGQAWGTMMVHKGLDLPCLKIRNFVVNFKNNSSKKQYKKWVELPIRFPDLDCSEY
CLYSDED
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccgtctgttctgcagaggacagcttcaggaatctcatctcaatcttcaggccc
agggtgaaaatgaacattcaggtggagccggtgctggactacctcgtctttctgccggca
gaaaccaaagagcagattcttagaaaggtcaccacctgtggtaacaccagcgccgcagaa
ctgctgctgagcaccttggagcagggacagtggccgctgggatggacgcagatgttcgtc
gaggccctggagcacagtggcaaccctctagccgcgcgctatgtcaaacccagtcttact
gatctgccctctccttcctctgagaccgcccatgatgagtgtctccacttgctgaacctc
ctccagcccactttagtgggcaagctcctgattaatgatgtcttggatacttgctccgag
aagggactggtgacagtcgaggacagaaatcggatttctgctgcgggaaatagtgggaat
gagtcaggagtaagagaactgctgagaaggatagtgcagaaagaaaactggttttctacc
ttcctggatgttcttcgccaaactggaaacgatgcgctagtccaagagctaacaggtgtg
agctgcccagaagagagcacagacttggataacgcatctcacaaagacaggcctgcagct
aacgagccccttctgcccgccatcgatgcattaagtctggagacagaggcctggaccata
gaggacacctcaccagaggcttcctttgcagattcttctgtgaccacagaatcagacaca
agtttggcagaaggaagtgtcagctgcttcgatgaaagtcttggacataacagcaacatg
ggcagggattcaggcaccatgggaagtgattcagatgaagataccatcatggggacaaaa
agagcatcccccaagccagaactgcagctcaggccttaccaaatggaagtggcccagcct
gccctggatgggaagaatattattatctgcctccccacggggagcgggaaaaccagagtg
gcagtttacatcaccaaagatcacttagacaagaagaagcaggcgtgtgaatccgggaag
gttatcgtccttgtcaataaggtaatgttagcagaacaacttttccgcaaagagttcaac
ccgttcttgaagaaatggtatcgcattattggattaagcggcgatacccagctgaaaata
tcttttccagaagttgtcaaatcttacgatgttattatcagcacagctcaaatccttgaa
aactccctcttaaatctggagagtggggaagatgatggtgtgcagctgtcagacttttcc
cttattatcattgacgagtgtcatcataccaacaaggaggcagtctataacaacatcatg
agacggtatttgaagcagaagttgaaaaaccataaactcaagaaacaaaacaaaccaaca
attcacctgcctcagatactaggactgacagcttcaccgggtgttggagcagccaaaaag
caatctgaggctgaaaaacatattttaaatatatgtgccaatctcgatgcctttaccatt
aaaacagtgaaagagaatctcagtcaactcaaacaccaaataaaggaaccatgcaagaag
tttgtgattgctgatgacaccagagagaatccatttaaagagaaacttctagaaattatg
gcaagcattcaaacttactgccaaaagagtccattgtcagattttggaacccaacattat
gagcagtgggctattcaaatggaaaaaaaagctgctaaagacggaaatcgcagagatcgt
gtctgtgcagaacatttgaggaagtacaacgaagccctacaaatcaatgacacgatccga
atgattgacgcgtacagccacctggaaacgttctacaccgacgagaaagaaaagaagttt
gcagccctcaatgacagcgatgagagtgacgacgacgaggccagcagttgccatgaccaa
cttaagggcaatgtaaagaaatctttgaaactggacgaaacggatgaatttctcatgaat
ttgttcttcgataacaagaaaatgttgaaaaaactagctgaaaacccaaagtacgagaac
gaaaaactcattaaattaagaaacacgatcctggaacagttcacaaggtctgaggagtcc
tcccgaggaattattttcacaaaaacgcggcagagcacctatgcgctttcccagtggatt
atggagaatgaaaagtttgcggaagttggagtcaaagcgcatcacctgattggcgcggga
cacagcagcgaggtcaagcccatgactcagactgaacaaaaagaagtcattagtaaattt
cgcactggggaaataaatctgcttatcgctactacggtggcagaggaaggcctggatatc
aaagaatgcaatatcgttatccggtatggccttgtcacgaacgagatagccatggtccag
gcccggggtcgagctagagccgatgagagcacctacgtcctggttaccagcagtggctcg
ggagttactgaacgggagattgttaatgatttccgagagaagatgatgtataaagctatt
aaccgtgttcaaaatatgaaaccagaggagtatgcacataagattttggaattacaagtg
caaagtatcttggaaaagaagatgaaagtcaagagaagtattgcgaggcagtacaacagc
gatccatcgttaataacacttctctgcaaaaactgtagtacgctggtctgctcaggagaa
aacatccacgtaattgagaagatgcatcatgtcaacatgacaccagagttcaagggactc
tacattgtgagagagaacaaagcactacaaatgaaatttgctgattatcagacaaatgga
gagattatctgcaaatgtggccaagcttggggaacaatgatggtgcacaaaggtttagat
ttgccttgtcttaaaataaggaattttgtagtcaatttcaaaaataactcatcaaagaaa
cagtacaagaagtgggtggaattgcctatcagatttcctgatctcgattgctcagagtac
tgcttgtatagtgatgaagactag
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integrated database retrieval system