Rattus norvegicus (rat): 500988
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Entry
500988 CDS
T01003
Symbol
Ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
500988 (Ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
500988 (Ddx6)
03036 Chromosome and associated proteins [BR:
rno03036
]
500988 (Ddx6)
Enzymes [BR:
rno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
500988 (Ddx6)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
500988 (Ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
500988 (Ddx6)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Gene silencing
piRNA pathway
500988 (Ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
500988
NCBI-ProteinID:
NP_001102762
RGD:
1564560
Ensembl:
ENSRNOG00000053932
UniProt:
D3ZD73
A6J406
LinkDB
All DBs
Position
8:53827661..53864538
Genome browser
AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKASAGPGGGGPQTQTQMNQLKNTSTINNGTQQQAQ
SMAATIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPAED
EKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccaggacagagaaccctgttatcatgggtctgtccagtcagaacggccag
ctgaggggccctgtgaaggccagtgccggccctggaggagggggcccacagacacagaca
cagatgaaccagttgaagaacaccagcacaatcaataatggcactcagcagcaagcacag
agcatggccgccaccattaaacctggtgatgactggaaaaagactttaaaactccctcca
aaggatctaagaattaaaacttcggatgtgacctccacaaaaggaaatgagtttgaagat
tactgtttgaaacgagagttgctaatgggaatttttgaaatgggctgggaaaaaccatct
cctattcaggaggagagcattcccattgctttatctggtagggatatcttagctagagca
aaaaatggaacaggcaaaagcggtgcctacctcatccccttacttgaacggctggacctg
aagaaggacaatattcaagcaatggtgattgttcccactagagaacttgctctacaggtc
agtcaaatttgcatccaggtcagcaaacacatgggaggggccaaagtgatggcgaccact
ggaggaaccaatttacgggatgacataatgaggcttgacgatacagtgcatgtggtgatt
gctacccctggcagaatcctggatcttatcaagaaaggagtagcaaaggttgatcatgtc
cagatgatagtattggatgaggcagataagttgttgtcacaggactttgtgcagataatg
gaggatattattctcacactacctaaaaataggcagattttactatattccgctactttc
cctcttagtgtacaaaagtttatgaattcccatctgcaaaaaccctacgagataaacctg
atggaggagctaactctgaaaggggtgacccagtactacgcatatgtaacggagcgccaa
aaagtgcactgcctcaatacactcttctccaggcttcagataaaccagtcgatcattttc
tgcaactcttctcagagagttgagttactggccaagaagatttctcagctgggttactct
tgcttctatatccatgctaaaatgaggcaggaacatagaaatcgtgtctttcatgatttc
cgaaatggcttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgatata
caagctgtgaatgtggtaataaactttgacttcccaaagctggcagagacctatcttcat
cggattggaaggtcaggtcgctttggtcatcttggcttagccatcaacttgatcacatat
gatgatcgcttcaacctgaagagtattgaggagcagctggggacagagatcaaacccatc
ccaagcaacattgacaagagcctgtatgtggcagaataccacagtgagcctgcagaagat
gagaaaccttaa
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