Rattus norvegicus (rat): 50676
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Entry
50676 CDS
T01003
Symbol
Slc6a12
Name
(RefSeq) sodium- and chloride-dependent betaine transporter
KO
K05045
solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04082
Neuroactive ligand signaling
rno04721
Synaptic vesicle cycle
rno04727
GABAergic synapse
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
50676 (Slc6a12)
09150 Organismal Systems
09156 Nervous system
04727 GABAergic synapse
50676 (Slc6a12)
04721 Synaptic vesicle cycle
50676 (Slc6a12)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rno02000
]
50676 (Slc6a12)
Transporters [BR:
rno02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
50676 (Slc6a12)
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
50676
NCBI-ProteinID:
NP_059031
RGD:
620255
Ensembl:
ENSRNOG00000013547
UniProt:
P48056
A6ILC6
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Position
4:156257518..156275870
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AA seq
628 aa
AA seq
DB search
MSSGAWEERVSLSSMDRKVTVHEDGCPVVSWVPEEGEMMDQKDKDQVKDRGQWTNKMEFV
LSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYFIFFFSCGIPVFFLEVALGQYSSQGSVT
AWRKICPLLQGIGMASVVIESYLNIYYIIILAWALFYLFSSFTWELPWTTCTNSWNTEHC
VDFLNYSSTRAASYSENFTSPVMEFWERRVLGITSGIHDLGSLRWELALCLLLAWIICYF
CIWKGVKSTGKVVYFTATFPYLMLIILLIRGVTLPGAYQGIVFYLKPDLLRLKDPQVWMD
AGTQIFFSFAICQGCLTALGSYNKYHNNCYRDSIALCFLNSATSFVAGFVVFSILGFMAQ
EQGVPISEVAESGPGLAFIAFPKAVTMMPLSQLWSCLFFLMLLFLGLDSQFVCMECLVTA
SMDMFPQQLRKRGRRELLILAVAIVCYLMGLLLVTEGGMYIFQLFDYYASSGICLLFLSL
FEVICIGWVYGADRFYDNVEDMIGYRPWPLVKISWLFLTPGLCLATFFFSLSKYTPLKYN
NVYIYPSWGYSIGWLLAFSSMACVPLFIIITLLKTQGSFKKRLQRLITPDPSLPQPGRRS
PQDGSSAQNCSTSPVKQELIAWEKETHL
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgggagcttgggaagaaagggtctccctctccagtatggacagaaaggttaca
gtccatgaagatgggtgtcctgtggtctcttgggtccctgaggagggagagatgatggac
cagaaagacaaggaccaggtgaaggatcgaggccaatggaccaacaagatggagttcgta
ctgtcagtggcgggagagatcattggcttaggcaacgtctggaggtttccctatctctgc
tacaagaacgggggaggagccttcttcatcccctacttcatcttcttcttcagctgtggt
atcccagtgttcttcctggaggtggcactgggtcagtatagcagccaggggagtgttact
gcttggaggaagatctgtccccttctccaaggcattggcatggcatctgtggtcatcgag
tcttatttgaacatctactacatcatcatccttgcctgggctctcttctacctgttcagc
tccttcacctgggagcttccctggacaacctgcaccaactcctggaacacagaacattgc
gtggactttctgaactactcatcgaccagagccgcaagctactctgagaacttcacctca
ccagtcatggaattctgggagagacgggttttgggtattacatcaggcatccatgacctg
gggtccctgcgctgggagctggccctgtgcctcctgctcgcctggatcatctgctacttc
tgcatctggaagggagtcaagtccacgggcaaggttgtttacttcacagccacttttccc
tacctgatgctgattattcttctgatccggggtgttacccttcctggagcctaccagggc
atcgtcttctacctgaagccagacttgctccgcctcaaggacccccaggtgtggatggat
gcgggcacccagatcttcttttcctttgccatctgccaggggtgcctcacggccctgggc
agctacaacaagtaccacaacaactgctacagggactccatcgccctctgcttcctgaac
agtgccaccagcttcgtggctggttttgttgtcttctccatcctgggcttcatggctcag
gagcagggcgtgcccatttctgaagtggctgagtcaggtcctggactggctttcattgcc
ttccccaaagcagtgacgatgatgcctttgtcccagctgtggtcctgcctcttcttcctc
atgctcctatttctagggctggacagccagttcgtctgtatggagtgcctggtcactgct
tccatggatatgtttcctcagcagctccgaaagagaggccggcgcgagctgctgatcctc
gcagttgctatcgtgtgctacttgatggggctccttctggtcactgagggtgggatgtac
attttccagctctttgactactacgcctccagcggaatatgcctactcttcctctccttg
tttgaggtcatctgcattggctgggtgtacggggcggatcgtttctatgacaacgtggag
gacatgattggctatcggccatggcccttggtgaagatctcttggctcttcctgacccct
ggtctttgcctggccaccttcttcttctccttgagcaagtatacacctctcaaatacaac
aatgtctacatatacccttcttggggatactccattggatggctcttggctttttcctcc
atggcctgtgtaccgctctttattatcatcaccctcctgaagacccagggctccttcaag
aagcgccttcaaagactcatcacgccagatcccagtctgccccagccagggaggcgttca
cctcaggatggctcctctgctcaaaactgttcgacctctccagtcaagcaagaactcatt
gcctgggagaaggagacgcatttgtag
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