Rattus norvegicus (rat): 53372
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Entry
53372 CDS
T01003
Symbol
Nup54
Name
(RefSeq) nuclear pore complex protein Nup54
KO
K14308
nuclear pore complex protein Nup54
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03013
Nucleocytoplasmic transport
rno05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
53372 (Nup54)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
53372 (Nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
53372 (Nup54)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
53372 (Nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
XhlA
Motif
Other DBs
NCBI-GeneID:
53372
NCBI-ProteinID:
NP_059057
RGD:
619926
Ensembl:
ENSRNOG00000002247
UniProt:
P70582
A6KK71
Structure
PDB
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All DBs
Position
14:15901936..15920335
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AA seq
510 aa
AA seq
DB search
MAFNFGAPSGTSGTSTATAAPAGGFGGFGTTTTTAGSAFSFSAPTNTGSTGLLGGTQNKG
FGFGTGFGTSTGTGTGLGTGLGTGLGFGGFNTQQQQQQQQTSLGGLFSQPAQAPAQSNQL
INTASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNNNIPPVEFTQENPFCRFKAVG
YSCMPNNKDEDGLVVLIFNKKETDIRSQQQQLVESLHKVLGGNQTLTVNVEGIKTLPDDQ
TEVVIYIVERSPNGTSRRVPATTLYAHFEQANIKTQLQQLGVTLSMTRTELSPAQIKQLL
QNPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISED
ISELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQAEEEQLRVQLDTI
QGELNAPTQFKGRLNELMSQIRMQNHFGAVKSEEKYYIDADLLREIKQHLKQQQEGLSHL
ISIIKDDLEDIKLVEHGLNETIHSRGGVFS
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggcattcaattttggggctccttcgggcacttcgggcacctctacagccaccgcggca
ccggcgggcgggtttggcggatttggaacaacaactacaactgcaggctctgcattcagc
ttttctgccccaacaaacacaggcagtacaggccttctcggcggcactcagaacaaaggt
tttggctttggcactggttttggcacatcgacgggtactggcactggtttaggcactggc
ttgggaaccggacttggattcggaggatttaacacccagcagcagcagcagcagcagcag
acttctttaggcggtctcttcagtcagcctgcacaggcccctgcgcagtccaaccaactc
atcaacactgccagcgctctttctgctccaacgctattgggggatgagagagatgccatc
ttggcaaagtggaaccagttgcaggccttctggggaacaggaaaaggatatttcaataat
aacattcctccagtggagtttacacaggaaaaccccttttgccgatttaaggctgtcggt
tacagttgtatgcccaataacaaagatgaagatggactagtggttctaattttcaacaaa
aaagaaacagatattagaagccaacaacagcagttggtagaatcattgcataaagttctg
ggaggaaaccagaccctcactgtcaatgtggagggcattaagacactgcccgacgatcag
acagaagttgtcatttacattgttgagcgctctccaaatggcacctcgagaagagttcca
gcgacaacgctgtatgcccactttgagcaagccaacattaaaacacagcttcagcagctt
ggcgtgaccctttctatgaccagaacagagctgtctcctgctcagatcaagcagctccta
cagaaccctcctgctggtgttgatcccattatttgggaacaggccaaggtggataacccg
gattctgaaaaattaattcctgttccaatggtgggtttcaaagaattgcttcgaagactg
aaggttcaagaccagatgactaagcagcaccagaccagattagatatcatatctgaagat
attagtgaactgcaaaagaatcaaactacaactatggccaaaatagcacaatacaagagg
aaactgatggatctctcacacagaaccttacaggtcctaatcaagcaggaaatccagagg
aagagtggctatgccatccaggctgaggaagaacagttgcgggttcagctagatacgatt
caaggagagctgaatgcacccactcagttcaaaggtcgactgaatgaactgatgtcccag
atcaggatgcagaatcattttggagctgtgaaatctgaagaaaagtattacatagatgca
gacctattacgagagatcaagcagcatttgaaacagcaacaggaaggccttagccacctg
attagcatcataaaagacgacctggaagatatcaagctggtagagcatggactgaatgag
accatccacagcagaggcggggtctttagctga
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