Rattus norvegicus (rat): 548104
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Entry
548104 CDS
T01003
Symbol
Pcdhb17
Name
(RefSeq) protocadherin beta-16 precursor
KO
K16494
protocadherin beta
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rno04515
]
548104 (Pcdhb17)
Cell adhesion molecules [BR:
rno04515
]
Cadherins
Protocadherins
548104 (Pcdhb17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
REJ
Motif
Other DBs
NCBI-GeneID:
548104
NCBI-ProteinID:
NP_001395834
RGD:
1549775
UniProt:
A6J374
LinkDB
All DBs
Position
18:29470868..29475832
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AA seq
792 aa
AA seq
DB search
MAARRSGFPRQRQVVFLFLFGGLCLAGSEFGRYSVMEETERGSFVVNLAKDLGLGVETLA
AKRTRVISDDNKQHLLLDSHTGDLLTNEKLDREKLCGSTEPCMLYFQILMDNPFQIYRAE
LRILDINDHSPIFQDKKMILKIPENTAVGTAFRLERAQDSDGGRNGIQNYTISPNTFFHI
TIHDSDDGMIYPELVLDKALDWEEQPEFSLTLTALDGGSPPRSGTATIHIVVLDVNDNAP
QFPQEFYETKVPENSPVGLVVIKVTGEDGDSGVNAEISYSFFDASEDIRATFQINPFSGE
ITLRALLDYEFIKSYKLNVQAVDGGGLSARCTVLVRVLDINDNPPELIMSSLVNEVVENS
PETVLAVFRINDRDSGENGKMVCYIQENLPLLLKPSVDNYYILMTEGALDRESIAEYNIT
ITVSDLGTPKLTTQHTITVQVSDINDNAPAFTQTSYTLFVHENNSPALHVGTISATDSDS
GSNAHITYSLLPPQDPQLALDSLISINADNGQLFALRALDYEALQAFEFHVGATDGGSPA
LNSQALVRVVVLDDNDNEPFVLYPLQNASAPYTELLPRTAEPGYLVTKVVAVDRDSGQNA
WLSFQLLKATEPGLFSVWAHNGEVRTTRLLSERDVPKHRLLLLVKDNGDPPRSASVMLQV
LLVDGFSQPYLPLPDVSRNPTEGEEDVLTLYLVIALASVSSLFLLSVLLFVGVRLCRRAR
AASLGGCSVPEGHFPDHLVDVSGTGTLSQSYQYEVCLMGGSSGTSDFKFLKPIYPQVHAY
GPQDNSDEKPTF
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggcagccagaagatcaggcttccccagacaaaggcaagtggtatttctcttcctgttt
gggggactgtgtttggcaggttctgagtttggacgttattcagtgatggaggaaacagaa
aggggatcatttgtggtgaatctagcaaaggatctggggctaggggtggaaacgctggct
gcaaagagaactagggtgatttctgatgataacaaacagcacttgcttctggattctcac
actggagatttgctcacaaatgagaaactggaccgagagaagctatgtggctccacagag
ccctgcatgctgtatttccaaattttaatggataacccctttcagatttaccgggctgag
ctgagaattctggatataaatgatcactcaccaatattccaggacaaaaagatgatttta
aaaataccagaaaatacagctgtggggacagcatttcgattagaaagagcacaagactca
gatggtggacggaacggcatccaaaactataccatcagtcccaacactttttttcatatt
accattcatgacagcgatgatgggatgatatatccagagcttgtgctagacaaagctctg
gattgggaggagcagccagagttcagtttaacactcacagcacttgatggcgggtctccg
ccaaggtctggaacagccactatacatattgtggtcttggacgtcaatgataatgcccca
cagtttccccaagaattttatgaaaccaaggttccagaaaacagtccagtaggtcttgtt
gtcattaaagtcactggagaagatggagactccggagtcaatgcagaaatatcctattcg
ttttttgatgcttctgaagatattcgagcaacctttcaaatcaatcctttctctggagaa
atcacactcagagccttgcttgactatgagttcataaagtcctataagttaaatgtacaa
gcagttgatggtgggggactttcagcaagatgtacggttttggttcgggttttagacatt
aatgacaatccccctgaactgatcatgtcatcacttgtcaacgaagttgttgagaactct
cctgaaaccgtactggcagtttttaggattaacgacagagattctggagagaatggaaaa
atggtttgctacattcaagaaaatctgcctctccttctaaaaccctccgtagacaattat
tacatcctaatgacagaaggggcactggacagagagagcatagctgagtacaacatcacc
atcactgtctcagacctgggcacacccaagctcacaacccagcacactataacagtgcag
gtgtctgacatcaatgacaacgctcccgccttcacccagacctcctacaccctgttcgtc
catgagaacaacagccctgccctgcacgtaggcaccatcagtgccacagactcagactca
ggctccaatgcccacatcacctactcactgctgcctccccaagacccgcagctggccctc
gactcgctcatctccatcaatgctgacaatgggcagctgttcgcgctcagggcattagac
tacgaagcccttcaggccttcgagttccacgtgggtgccacagatggaggctcgcccgcc
ctcaacagccaggctctggtgcgggtggtggttctagacgacaatgacaatgagcctttc
gtgctctacccactgcagaatgcctcagcgccctacacagaactgctgcccaggaccgca
gagccaggctacctggtcaccaaggtggtggctgtggatcgagactctggccagaatgcc
tggctgtcattccagctgctcaaggccacggagcccgggctgttcagtgtgtgggcgcac
aatggcgaggtgcgcaccaccaggctattgagtgaacgcgatgtacccaagcacaggctg
ctgctgctggtcaaggacaatggggatcctccacgctctgccagtgtcatgctgcaagtg
ctactagtggatggcttctcccagccctacctgcctctgcctgatgtgtcgcgcaacccc
actgaaggggaagaggatgtgctcacgctgtacctggtcatagccttggcatctgtgtct
tctctcttcctcttgtctgtgctgctgttcgtgggggtgaggctgtgcaggagggccagg
gcagcctctctgggtggctgctctgtgccggagggtcactttccggaccacctggtggac
gtcagcggtacaggaaccctgtcccagagctaccaatatgaggtgtgtctgatgggaggc
tcctctggtaccagtgatttcaagttcttgaagccgatttaccctcaagttcatgcttat
ggtccccaggacaatagtgatgaaaagcccacattttga
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