Rattus norvegicus (rat): 60379
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Entry
60379 CDS
T01003
Symbol
Col5a3
Name
(RefSeq) collagen alpha-3(V) chain precursor
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04820
Cytoskeleton in muscle cells
rno04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
60379 (Col5a3)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
60379 (Col5a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rno00536
]
60379 (Col5a3)
Glycosaminoglycan binding proteins [BR:
rno00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
60379 (Col5a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
60379
NCBI-ProteinID:
NP_068528
RGD:
70922
Ensembl:
ENSRNOG00000020525
UniProt:
Q9JI04
LinkDB
All DBs
Position
8:complement(27580768..27626002)
Genome browser
AA seq
1737 aa
AA seq
DB search
MRSCRRLDQLQAGLCLLLASLQLVSWTLAAEPVDVLETLGVHRDKAGVTKGPGFCPQRIP
QGDRAFRVGKSSLLSVPTWQLFPDGHFPENFSVLLTLRAQPANQSVLLSIYDENGVRQMG
LALGPALGLLGDSFRSLPKQINLMDGRWHRVAVSISGDKVTLVVDCEPQPPMFGQGPRVI
STAGLTVMGTQELGEESFEGDIQELLLIPDPQAALQACELYLPDCETPDSTTTGVTKEEP
ETPAPRRRKGKGKKKDRGRKGKGRKKNKTSRLSPTPGAPENQTSLHTPETEKPSPHLPPT
PTPLAITTTVTMGGNATVLQGLDSSTETEQMTPEMDATEESEGGGPTMGPEFRAAEQSLQ
TEFQIFPGAGEKGAKGEPATIEQGQQFEGPAGAPGPRGISGPSGPPGPPGFPGDRGLPGP
AGLPGIPGIDGVRGLPGTVIMMPFHFASGSMKGPPVSFQQAQAQAVLQQAQLSMKGPPGP
VGLTGRPGPVGLPGYPGLKGELGEAGPQGPRGLQGPPGPPGREGKTGRAGADGARGLPGD
TGPKGDRGFDGLPGLPGEKGQRGDFGPVGQPGPPGEDGIKGLQGPPGPTGQAGEPGPRGL
IGPRGPPGPLGRPGVTGSDGAPGAKGNVGPPGEPGPPGQQGNHGSQGIPGPQGPIGTPGE
KGPPGNPGIPGVPGSEGPPGHPGHEGPTGEKGAQGPPGSAGPQGYPGPRGVKGTSGNRGL
QGEKGERGEDGFPGFKGDEGPKGDRGNPGLPGPRGEDGPEGQKGPEGLPGDEGPPGAAGE
KGKLGVPGLPGYPGRPGPKGSIGFPGPLGPLGEKGKRGKAGQPGEEGERGTPGTRGDRGQ
PGATGQPGPKGDVGQNGSPGAPGEKGLPGLQGPPGFPGPKGPPGPQGKDGIPGHPGQRGE
LGFQGQTGPPGPAGVLGPQGKVGDVGPLGERGPPGPPGPPGEPGLPGIEGREGAKGELGP
LGSLGKEGPPGPMGFPGPQGAPGDPGPIGLKGDKGPPGPLGANGSPGERGPVGPSGGIGL
PGQSGGQGPIGPAGEKGSPGERGVPGPTGKDGIPGPPGLQGPPGAAGPSGEEGDKGEVGM
PGHKGSKGDKGDAGPPGPTGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGV
IGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPPGPSGSAGSPGLPGGVGQPGAVGE
KGEPGNAGDAGPPGVPGIPGPKGEIGEKGDSGPSGAAGPPGKKGPPGEDGAKGNMGPTGL
PGDLGPPGDPGVPGTDGIPGEKGNAGDIGGPGPPGASGEPGARGLPGKRGSPGRMGPEGK
EGEKGAKGDAGPDGPPGRTGPIGARGPPGRVGPDGLPGIPGPVGEPGLLGPPGLIGPPGP
LGPPGLPGLKGDAGLKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGLQGDPGLPGP
VGSLGHPGPPGVVGPLGQKGSKGSPGSLGPRGDPGPAGPPGPPGSPAEVHGLRRRRSVLD
TPEGGLEEVMASLNSLSLELEQLQRPPGTAESPGLICHELHRNHPHLPDGEYWIDPNQGC
ARDAFKVFCNFTAGGETCLYPDKKFETVKLASWSREKPGGWYSTFRRGKKFSYVDADGSP
VNVVQLTFLKLLSAAAHQRFTYTCQNSAAWLDEASGDHRHSIRFQGTNWEELSFNQTTAA
TIKVPHDGCRVRKGQAKTLFEFSSSVGFLPLWDVAAVDFGQTNQKFGFELGSVCFSS
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atgagaagctgccggagactggaccagcttcaggccggcctctgcctgctcctggcctcc
ctacaactcgtgtcctggacgctggctgcagaacctgtggatgtattggaaaccttgggt
gtgcatagggacaaggctggggtgaccaaagggcctggcttctgcccccagaggattcca
cagggtgaccgagcattcagggtgggcaagtccagccttctcagcgtccccacatggcag
ctctttccagatggacattttcctgagaacttttctgtgctgctcactctgcgggcccag
ccagccaatcaatctgtccttctgtctatatatgacgagaatggtgtccggcagatgggg
ctggcactggggccagctctgggtctccttggtgactctttcaggtctcttcccaagcag
atcaaccttatggatggcaggtggcaccgggtggcggtcagcatcagcggtgacaaggtg
accctggtggttgactgtgaacctcagccccccatgtttggtcaggggcctcgggttata
agtacagctggactcacggtgatgggaacccaggagctcggggaggagtcttttgaggga
gacatccaggagctgctgttaattccagaccctcaggctgctctccaggcctgtgagctc
tacctgcctgactgtgagacccccgattccacaaccacaggggtcactaaagaagaacca
gaaacacctgcccctcgtcgacgaaagggcaaaggaaagaaaaaagatcggggtcgcaag
ggcaagggaagaaagaaaaacaagacctcaagactgagtccaaccccaggtgcccctgag
aaccagacctccctccacacccctgagacagagaagccatcgccccatctgcctccaact
cccacacctttggccatcaccaccactgtcacgatgggaggaaatgccacagttttgcag
gggttggactccagtactgaaactgagcagatgactccagagatggacgctactgaagag
agtgaaggaggtggcccgaccatgggccccgagttccgggcagcagaacagtctttacag
actgagttccagatctttcctggtgctggagaaaagggagcgaaaggagaacctgcgact
atagagcagggacagcagtttgagggacctgcaggagctccaggaccccggggaatatct
ggtccttcaggccctcctgggcctccgggcttccctggggaccgtggcctaccgggccct
gctggcctcccaggaatcccaggcattgatggcgtccggggcctgccaggcacagtgatc
atgatgccgttccattttgcaagcggctcgatgaaaggacccccagtctcctttcaacag
gcacaggcccaggcagtactgcaacaggctcagctgtccatgaaagggccccctggtcca
gtagggctcactgggcgcccaggccctgtgggcctccctggatatccaggtctgaaaggt
gaattgggagaagcagggcctcagggcccccgaggattgcagggccctcctgggcctcct
ggacgggaaggcaagacaggccgagctggagcagatggggctcggggtcttccgggagac
acaggacctaagggtgaccggggctttgatggcctgcctggactgcctggtgagaagggc
cagaggggtgactttggacctgtaggacaacctggtcccccaggagaagatggtataaag
ggcctgcagggacctccaggccccactggccaggctggagagccgggtccccgaggtctg
attggccccagaggcccccctggtcctttaggacgcccgggtgtgacagggagtgatggc
gcaccgggtgccaaaggcaacgtgggtcctcccggagaaccaggccccccaggacagcaa
ggaaaccacggctcccagggaatcccaggcccccaggggcccattggcacacccggggag
aagggtcctcctggaaaccccggaattccaggtgtcccaggatctgagggccccccgggc
cacccaggccatgagggtcccaccggagaaaagggggctcagggcccaccagggtcagca
ggccctcagggctatcctggacctcgtggtgtgaagggtacctctggtaaccggggcctc
caaggagagaaaggagaaaggggagaggatggttttccaggcttcaagggtgatgaggga
ccaaaaggcgaccggggaaacccgggactcccaggtcccagaggagaggatggcccagaa
ggacaaaaggggcctgagggactgcctggtgatgagggccccccaggagcagcaggggag
aagggcaagcttggggtgccaggtctcccaggttatccaggacgcccaggacctaaggga
tctattggatttcctgggccccttggaccactgggggagaaaggcaagcggggcaaagca
gggcagccaggggaggaaggagaacgtggcacaccgggcaccagaggagacagaggacag
ccaggggccacaggccagcctggccctaagggagatgtgggccagaacgggtctcctggg
gcccccggagaaaagggtctacccggtctgcaaggtcccccaggattccctgggccaaaa
ggccccccaggtcctcaggggaaagatgggatacccggacaccctggacaaagaggagaa
ttgggcttccaaggtcagacaggcccccctggaccagctggtgtccttggtcctcaggga
aaggtaggggatgtgggtcctctaggcgagagaggccccccagggcctcctggaccgcct
ggtgaaccaggtctgccaggcatagaaggcagagaaggggccaagggtgagctaggaccc
ctggggtccctcggaaaggaggggccacctgggcccatgggcttccctggcccacaagga
gcccccggagacccaggacccattggtttgaagggtgacaagggtcccccgggccctctt
ggggcaaatggctccccaggtgagcgtggtcctgtgggcccctctggaggcattgggctt
cctggccagagtggtgggcaaggccctattggtcctgctggtgagaaggggtccccggga
gaacggggtgtgcctggtcctactggcaaagatggtattccagggcccccgggacttcag
gggccccctggagctgcagggccttctggtgaggaaggagacaagggggaagtagggatg
cctggacacaagggaagcaaaggggataaaggagatgcgggcccacctggaccaacagga
ataaggggtccagcgggccatccaggccccccgggtgctgatggtgctcagggtcgccgg
ggaccccctggcctctttgggcagaaaggtgatgatggagtccgaggctttgtaggtgta
attggtcctccaggcctgcaggggctgccgggccctcctggggagaaaggcgaggttgga
gacgtgggatccatgggtccccacggagctccaggccctcggggtccccctgggcccagt
ggatcagcgggttccccagggctgcctggaggagtagggcagcctggcgctgtgggcgag
aagggtgagccagggaatgctggagacgctggacccccaggagttccaggcatccctggg
cccaaaggtgaaattggtgaaaagggggattcgggtccatcaggggctgctggtcctcca
ggcaaaaagggacctcctggagaggacggagctaaggggaacatgggtcccacaggactc
cctggagatctaggacccccaggagaccctggagttccgggtacggatggcatcccaggg
gagaaggggaatgctggtgatattgggggaccggggccacctggagcttcaggggaacct
ggtgcccgtgggctccctggcaagaggggttcccctggccgcatgggtccagaaggaaaa
gagggagagaaaggcgccaagggagatgctggtcccgatggccccccaggcagaacaggc
cccattggggctcgggggccccctggacgggttgggcctgatggtcttccagggatccct
ggtcctgtgggtgaaccaggtctcctgggacctcctgggctaatcggccctccagggccc
ctgggcccacctggcctccctggcctgaagggagacgctggcctcaagggggaaaagggc
cacattgggctaatcggcctcattggtcccccaggggaggctggggaaaaaggcgatcag
gggttgccaggtgtgcagggccctccaggccttcagggagaccctggtcttcctggtcct
gttggctccttaggtcaccctgggcccccaggtgtggtgggccctctgggacagaagggt
tccaaggggtccccgggatctcttggacctcgtggagaccctggaccagcaggtcctcct
ggtcccccgggttcccctgctgaggtgcacggcctgcgtaggcgccgctctgtgttggac
accccagaaggtggcctggaggaagtgatggcctcactcaattcactgagcttggagctg
gagcagttgcagcgacccccaggcacagccgagagcccaggcctcatatgccacgagctt
catcgaaaccacccacacctgccggacggagagtactggattgaccccaatcagggctgt
gcacgggacgccttcaaggtcttctgcaacttcactgccggaggtgagacctgtctctac
ccagacaagaagtttgagacggtgaaactggcctcctggtcccgagaaaagcctggaggt
tggtacagcaccttccgccgagggaagaagttctcctatgtggatgctgacggctccccg
gtgaatgtggtccagttgaccttcctgaagttgttgagcgctgcagcccatcagaggttc
acttacacctgccagaactccgcagcatggctggacgaagcttcaggtgaccacaggcac
tctatccgcttccaagggaccaactgggaagagttgtccttcaaccagacaacagcagcc
accatcaaggtcccccatgatggctgccgggtccggaagggacaggcgaagaccctcttt
gaattcagctcttctgtgggctttctgcctctgtgggatgtggccgccgttgactttggc
cagacgaaccagaagtttgggtttgaacttggctccgtctgctttagcagctga
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