KEGG   Rattus norvegicus (rat): 679203
Entry
679203            CDS       T01003                                 
Symbol
Nelfcd
Name
(RefSeq) negative elongation factor C/D
  KO
K15181  negative elongation factor C/D
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    679203 (Nelfcd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rno03021]
    679203 (Nelfcd)
Transcription machinery [BR:rno03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    NELF complex
     679203 (Nelfcd)
SSDB
Motif
Pfam: TH1
Other DBs
NCBI-GeneID: 679203
NCBI-ProteinID: NP_001258183
RGD: 1590753
Ensembl: ENSRNOG00000047874
UniProt: A0A8I6B5Y3 A6KL31
LinkDB
Position
3:183631968..183643088
AA seq 591 aa
MAGPAPGTIMGEDYFGNASEWGEEADGGQHQEEDSGEGEDDAEVQQECLHKFSTRDYIME
PSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHL
KSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLI
SDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYL
FAQAMMSVLAQEEQGGSAVRRVAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAM
LSRGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGAKINQDHKHKYIHI
LAYAASVVETWKKNKRVSIGKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIR
FPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFET
EHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLD
VIAPPYTSDFVQLFLPILENDSIAGTIKAEGEHDPVTEFIAHCKSNFIVVN
NT seq 1776 nt   +upstreamnt  +downstreamnt
atggcgggtccagcgccgggtacgattatgggagaagactacttcgggaatgcgtctgag
tggggtgaagaggcggacggcggccagcatcaggaagaagattctggagaaggagaggat
gatgccgaggtgcagcaggaatgtctgcataagttttccacccgggactacatcatggag
ccctccatcttcaacactctgaagaggtatttccaagcaggagggtccccagaaaatgtc
atccagctcttatctgagaactatacggcggtggcccagactgtgaacctgctggctgag
tggctcattcagacaggtgttgagccagtgcaggtacaggagactgtggaaaaccacctc
aagagtttgctgatcaagcactttgaccctcggaaagcagattctatcttcactgaagaa
ggggagaccccggcttggcttgagcagatgatcgcacacaccacatggagagatctgttt
tataagttggctgaggcccatcctgactgtttgatgctcaacttcactgtgaagctcatc
tctgatgcaggctaccaaggtgagatcaccagcgtgtccacggcctgccagcagctggaa
gtgttctccagagtgctgcggacctctctagccacaatcttggacggaggagaagaaaac
ctggagaaaaatctccctgagtttgcaaagatggtgtgccatggggaacacacgtacctg
tttgcccaagccatgatgtccgtactggcccaggaggaacagggtggctctgcagtgcgc
agggtcgctcaagaagtccagcgcttcgcccaggagaaaggtcatgatgccagccagatc
acactggccttgggcacagctgcctcctacccccgtgcctgccaagcccttggagccatg
ctgtccaggggagccctgaatcctgcagacatcacggtcttgttcaagatgttcaccagc
atggaccctcctcctgtggagctcatccgggtgccagccttcctggacctgtttatgcag
tcgctcttcaagccaggggccaagatcaaccaggaccacaagcacaagtacattcacatc
ctggcttacgctgctagtgtggttgagacctggaagaagaacaagcgggttagcattggc
aaagatgagctcaagtccacgtcaaaggctgtagagaccgtccacaatctgtgctgcaat
gagaacaaaggggcctccgagctggtggctgagctgagcacactttatcagtgcattagg
tttccagtggtagcaatgggcgtgctgaagtgggtagattggactgtgtctgagccaagg
tacttccagctacagactgaccacactccggttcacctggccttgttggatgagatcagc
acctgccaccagctcctgcacccccaggtcctgcagctgctcgtcaagcttttcgagacc
gagcactcccagctagacgtgatggagcagctcgagttaaaaaagacgctgctggacagg
atggtgcacctgctgagccgtggctacgtcctccctgtggtcagctacatccgcaagtgt
ctggagaagctggacacggacatctcactcatccgctactttgtcactgaggttctggac
gtcatcgcccctccatacacctcagactttgtgcaacttttcctccccatcttggaaaac
gacagcattgcaggcaccatcaaggcagagggcgagcatgaccccgtgacggagttcatt
gctcactgcaagtctaacttcatcgtggtgaactga

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