Rattus norvegicus (rat): 680586
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Entry
680586 CDS
T01003
Symbol
Rc3h1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rno03000
]
680586 (Rc3h1)
04121 Ubiquitin system [BR:
rno04121
]
680586 (Rc3h1)
Transcription factors [BR:
rno03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
680586 (Rc3h1)
Ubiquitin system [BR:
rno04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
680586 (Rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
TPD52
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
680586
NCBI-ProteinID:
XP_008767920
RGD:
1563512
Ensembl:
ENSRNOG00000002750
UniProt:
A0A8I5ZR20
LinkDB
All DBs
Position
13:75707098..75779114
Genome browser
AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQIPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAPILPDE
STVDLPSRKPPALPNGIVSAGNTVTQLIPRGTDPGFDSTLKPVKLDHLSSSAPGSPPDLL
ECAPKSIPALPVNPHPVPPRAPTDLPPMPVPKPIQMVPRGSQLYPAQQADVYYQDPRGSA
PAFETAPYQQGVYYTQPTCVSRFVRPPPSAPESAPPYMDHYSPYLQDRVINSQYGTQPQQ
YPPMYPPHYDGRRVYPAQSYTREELFRESPLPIDIPSAAVPSYVPESRERYQQVEGYYPV
APHPAQIRPSYPRDPPYSRLPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTL
PPAFHQEEFLDEDLKVAGKYKANDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEMMN
VESKGMRDQRLDLQRRAVETSDDDLIPFGDRPTVSRFGAISRTSKTLYQGAGPMQALAPQ
GAPTKSINISDYSAYGAHGGWGDSPYSPHPNLPPQGHLIEREKMCMAEVASHGKPLLSAE
REQLRLELQQLNHQISQQTQLRGLEAVSNRLVLQREVNTLASQPQPPPLPPKWPGMISSE
QLSLELHQVEREIGKRTRELSMENQCSVDMKSKLGTSKQAENGQPEPQNKVPTEDLTLTF
SDVPNGSALTQENLSLLSNKTSSLHLSEDPEGGGDDSDSQRSGVVSSSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggatttcctttcctgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggctgtggccatactgtctgcaaaatg
tgcctgaataaactccaccgtaaggcttgcccatttgaccagaccactatcaatacggac
attgagctccttcctgtgaactcagcattactgcagctagtgggtgctcagatccctgag
caacaacccattactttgtgtagtggggttgaagatacaaagcattatgaggaagccaag
aaatgtgtagaagaattagcattgtacctgaaaccactcagcagtgcgagaggagtgggc
ttgaatagcactactcagagtgttctgagtcgcccaatgcagagaaaacttgtaactctg
gtccattgccagctagtggaagaagaaggcaggatccgtgctatgagggctgctcgatct
ttaggtgaacgcacagttacagagctcattctccagcaccagaatcctcagcaactctct
tctaacctttgggcagcagtcagagctcggggctgccagttccttggaccagcgatgcag
gaggaagctctgaagctggtcttgctggccttggaagatggttctgcattatcacggaaa
gtgttggttctctttgtggtacaaagactggagccacgttttcctcaagcctctaaaacc
agcattggacatgttgttcagctcctctacagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctttgatgcagctgaaagaagaatttaggacttatgaagctctgagg
cgagaacatgactcccagatagtgcaaattgctatggaagctggcttaaggattgcacca
gaccagtggtcctctctgctttatggggaccagtctcataaatctcatatgcagtctatt
attgacaagttgcagacccctgcctcttttgcacagagtgttcaggagctaacaattgct
ctccagcgaactggagatccagcgaatttgaaccgactaagaccccatttggagctacta
gcaaacattgaccctagtccagatgctcctcctccaacatgggaacagctagaaaatgga
ctggttgctgtacgtacagtagtccatggactggttgattatatccagaaccacagcaaa
aaaggagcagatcaacaacagcctccacagcatagcaaatacaaaacatacatgtgtcga
gatatgaagcaaaggggaggatgccctcgtggggccagctgtacgtttgcacattcgcag
gaagaactggaaaaatttcgtaaaatgaacaaacgtctggttcccagaagacctttgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcagcgcccatacttcccgatgaa
agcacagtggatttgcccagcagaaaacctcctgcactcccaaatggaattgtatcggca
gggaacacagtgacacagctgattcctcgtgggacagaccccggctttgattccactctg
aaaccagtaaagctagaccacctgagcagcagtgctccagggtcccctcccgacctgctg
gaatgtgcccctaagagtatccctgccttacctgtgaatccgcatcctgtacctccaagg
gcgccgacagatctgcctcccatgcccgtccccaaaccaattcagatggtgcctcgaggt
tcgcagttatatccagcgcagcaagcagacgtttactaccaggatccccgaggaagtgct
ccagcttttgagacagcaccttatcagcagggtgtgtactatacccagccaacatgtgtg
tcccgctttgtccgacctccaccatctgctcctgaatctgctcctccatacatggatcat
tattcaccctacctccaagatcgtgtcataaactctcagtatggcacacagccacaacag
tacccacctatgtacccacctcactatgatggccgccgcgtataccctgctcagtcttat
acaagagaagagctgttccgggaaagccctctacccatcgacattccatctgcagcagtg
ccgtcctatgtacctgagtccagagagcgataccaacaggtggagggctactacccagtg
gctcctcatccagctcagatcagaccttcataccccagggatcctccttatagtcgactt
cctcctcctcaaccccatcctagtctggatgagctacatagaaggcggaaggaaataatg
gcccaactagaagaaagaaaggttatctctccgcctccttttgcaccttcaccaacattg
cctcctgcgttccatcaagaggaatttttggatgaagacttgaaggtagctggaaaatac
aaagcaaatgattatagccaatattctccttggtcatgtgataccatcggctcctacatt
ggaaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtggaaatgatgaat
gtagaaagtaaaggaatgagagaccagaggttggatcttcagagaagagcagtggaaact
agtgatgatgaccttatcccatttggcgaccgaccaacggtatctcgatttggtgccatc
tctcgaacatccaaaacactgtatcagggtgctggcccaatgcaagctctggcacctcag
ggagcacccacaaaatctattaacatttctgattacagtgcatatggagctcatggtggc
tggggagactctccatactcgcctcatccaaacctacctcctcagggacacctcatagag
agggagaaaatgtgcatggcagaagtggccagtcatggaaaaccccttctgtctgctgaa
agagaacaattacggctagaattgcagcaactgaaccatcagatcagccagcagacccag
ctacgtggactagaggctgttagtaaccggctggtgttacagagggaggtgaacaccctg
gcaagccagccacagccccctccgctgcctccaaaatggcctggaatgatctcaagtgag
cagctaagcttggaactgcatcaggtggaaagggaaattgggaagaggacccgggaattg
agtatggagaaccagtgttctgtagacatgaaaagcaaactgggtacaagtaaacaggca
gagaatggacagccagagccacaaaacaaggtccctactgaggatcttacgttgacattc
agtgatgtaccaaatggatcagccttgacacaagagaatctcagcctcctgtcaaacaag
accagctctttgcacctgtcagaggaccctgagggaggaggagatgacagcgactcccag
agatcaggagtggtttccagttctgctccctag
DBGET
integrated database retrieval system
