Rattus norvegicus (rat): 684558
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Entry
684558 CDS
T01003
Symbol
Upf1
Name
(RefSeq) UPF1, RNA helicase and ATPase
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03013
Nucleocytoplasmic transport
rno03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
684558 (Upf1)
03015 mRNA surveillance pathway
684558 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
684558 (Upf1)
Enzymes [BR:
rno01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
684558 (Upf1)
5.6.2.5 RNA 5'-3' helicase
684558 (Upf1)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
684558 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
684558 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
684558
NCBI-ProteinID:
NP_001414288
RGD:
1589127
Ensembl:
ENSRNOG00000020134
Vega:
OTTRNOG00000001982
UniProt:
A6KA57
LinkDB
All DBs
Position
16:19110531..19131327
Genome browser
AA seq
1113 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPGGA
GAGGAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSDMRLMQGDEICLR
YKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQS
ALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQR
PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLC
AKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERE
LLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQ
LGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGV
TAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA
KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN
EHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYKEQKALVEGPLNN
LRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQ
ISMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKSKTGRGGRQKNRF
GLPGPSQTTLPNSQASQDVASQPFSQGALTQGYVSMSQPSQMSQPGLSQPELSQDSYLGD
EFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctctcagacactcaccttcttggacactgaggag
gccgagctgctcggtgccgacacccagggctccgagttcgagttcaccgacttcacccta
cccagccagacgcagacgccccccggcggccccggcggcgcgggaggcccaggcggagcg
ggtgcaggcggcgcggccggccagctcgacgcgcaagttggaccagagggcatcttgcaa
aatggggctgtggatgacagtgtggccaagaccagccagctgctggctgagctgaacttc
gaggaagatgaagaggacacatattataccaaggacctcccagtccatgcctgcagttac
tgcggaatccatgatcctgcctgcgtggtttactgtaataccagcaagaagtggttctgc
aacggccgaggaaatacttctggcagccacattgtaaatcacctcgtgagggcaaaatgc
aaggaagtgacgctgcacaaggacgggcccctgggtgagacagtactggagtgctacaac
tgtggctgccggaacgtcttcctgctgggcttcatccctgcgaaggcggactctgtggtg
gtgctgttgtgcaggcagccctgcgccagccagagcagcctgaaggacatcaactgggac
agctcccagtggcagcccctgatccaggaccggtgcttcctgtcatggctggtcaagatt
ccctctgagcaggagcagctgcgagcacgacagatcactgcacagcagatcaacaagctg
gaggagctctggaaggaaaatccttcagcaaccctggaggatctggagaagccgggcgtg
gatgaggagccgcagcacgtgctcctgcggtacgaggatgcttaccagtaccagaacatc
ttcgggccactggtcaagctggaggctgactatgacaagaagttgaaggagtcacagact
caagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgccttcttc
actttgcccaagactgactctgatatgcggctgatgcagggggatgagatctgtctgcgg
tacaaaggggatctggcacccctatggaaggggattggccacgtcatcaaggttcccgat
aattatggtgatgagattgccattgaactccgcagtagcgtgggtgcccccgtggaagtg
acccacaacttccaagtggattttgtgtggaagtcaacctcttttgataggatgcagagt
gcattgaagaccttcgctgtggacgagacctctgtgtcagggtatatttaccacaagctg
ctgggccacgaggtggaagatgttgtcatcaagtgccagctgccaaagcgcttcacggct
caggggctccccgacctcaaccactctcaggtgtatgctgtgaagactgtgctgcagaga
cccctcagcctcatccagggccctccaggcacaggcaagactgtgacatcagccaccatt
gtctaccaccttgctcggcagggcaatgggcccgtgctagtctgtgctccaagtaacatt
gccgtggaccagctcacggagaagatccaccagactgggctgaaggtcgtacgcctctgt
gccaagagccgtgaggccattgattccccagtgtccttcctggctttgcacaaccagatc
aggaacatggacagcatgcctgagctgcagaagctgcagcagctgaaggatgagacaggc
gagctgtcatctgcagatgagaagcggtaccgggcgcttaagcgcacagctgagagagaa
cttctcatgaatgcagatgtcatctgctgcacatgtgtgggtgctggtgacccgaggctg
gccaagatgcagttccgttccatcctcattgacgagagcacccaggccactgagcctgag
tgcatggtgcctgtagtccttggggccaagcagctgatcctcgtgggtgaccactgccag
ctgggcccagtagtgatgtgcaagaaggcagccaaggccgggttgtctcaatcgctcttc
gagcgcttggtggtgctgggcatccggcccatccgcctgcaggtgcaataccgcatgcac
cctgcactcagcgccttcccgtccaacatcttctacgagggctcgctgcagaatggcgtc
actgcagccgatcgtgtcaagaaaggttttgacttccagtggccacagcctgacaagccc
atgttcttctacgtgacacagggccaggaggagattgccagctctggcacatcctacctc
aacaggacggaggcagccaatgtggagaagataacgacaaagctgctgaaggcaggcgcg
aagcctgaccagattggcatcatcactccctacgagggccagcgctcctacttggtgcag
tacatgcagttcagcggctccctgcacacgaagctctaccaggaagtggagattgcaagc
gtggatgccttccagggccgggagaaggacttcatcatcctgtcctgcgtgcgtgccaat
gagcaccagggtattgggttcttaaacgacccccggcgtctcaatgtggctctcaccaga
gcaaggtacggggtgatcatcgtgggtaacccaaaggcactgtcgaagcagcccctgtgg
aaccacctgctgagctactacaaggagcagaaggcgctggtggaagggccgctcaacaac
ctgcgggagagcctcatgcagttcagcaagcctcgcaagcttgtcaacaccgtcaatccg
ggggcccgcttcatgactactgccatgtatgatgcccgtgaggctatcatccccggatct
gtctatgaccgcagcagccagggccggccctcaaacatgtacttccagacccatgaccag
attagcatgatcagcgcaggtcccagccatgtggctgccatgaacatccccattcccttc
aacttggtcatgcctcccatgccaccacctgggtacttcggacaggccaacgggccagct
gctggtcggggcaccccaaaaagcaagactggccgtggaggccgccagaagaaccgcttt
gggcttcctgggcccagccagactacccttcccaacagccaggccagccaggatgtggcc
tcacagcccttttcgcagggtgccctcacacaaggttatgtgtccatgagccagccctct
cagatgagccagcctggcctctcccagccagaattgtcccaggacagctacctcggtgat
gagtttaaatcacagattgacgtggcactctcacaagactccacataccagggagagcgg
gcataccagcacggcggggtcaccgggctgtcccagtactag
DBGET
integrated database retrieval system
