Rattus norvegicus (rat): 686050
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Entry
686050 CDS
T01003
Symbol
Shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog isoform X1
KO
K28108
shortage in chiasmata 1
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rno03036
]
686050 (Shoc1)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Meiosis-specific proteins
Others
686050 (Shoc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_ATPase
SHOC1_PDDEXK
SHOC1_HhH_tandem
YhaO_M
SHOC1_PDDEXK_dom
GMP_PDE_delta
Motif
Other DBs
NCBI-GeneID:
686050
NCBI-ProteinID:
XP_038966970
RGD:
1586646
Ensembl:
ENSRNOG00000060520
UniProt:
A0A0G2JZW6
LinkDB
All DBs
Position
5:complement(78655723..78751658)
Genome browser
AA seq
1478 aa
AA seq
DB search
MALNGRAMFSAFKYYAIDYLYENTVKERLYRDALLLQIPSCLNQDRKIIDDKYRSPWTRA
IPVLEITDNSILDEWRARFCVEDVLEKKTVTGRMINGTFEEIVPSSNPNSPSGVEDDKSE
PWKGYVEDFTPVKCSPAYPGVKVEHQGLLIDEEMIFMNKAMDNHLPTVNTLLSRLKLYLV
KDPLLEFKEGPCGKDNFMECFSVQEHSESFVRDFRMAEETFCKEKLPSVFPFELKSLMST
NSKQEILVLPPSKLKELLDSIPKTVDSVDENEHFNRDLSSKHGFDTEDISCSSTENLTCA
RLCEPECDEPGELEMPPSHLSLPRQHSSVNSLYAGFQTFPFSAACKINLLGAGESANTYC
MLWQLGSCRNSWVSFLLTVPRFQETSSQYSLADMRNIFSVKGDSLVIHPAKTKGWRQARL
NPVMAETLEHLQAYLCHNGLSAQETKLEIFLPTKVLELESWLEPKNSPSLLLPISEKSAD
AHQLHPQKRPSSEREGPRLRLSAEQRASVKNSNMEANPKSGQEPAARMMQKTDNGCVGLG
NPVPSVESASSSQIKTSYDKNRDDLDLLSEFIILRSKHQTFLSEAEVKSQDQNNEFQDKE
KYSLTLQEESPVVSNNKAPEERCQERADDVIRIPASDTQCQAYCLLEATAIPILQKLVCL
CAYPAANWKFATVNFDQTRFFLKEQEKIINDAIHQDKNDDRKMTFKHAALLHLLVTIRDV
LLTCGLDEALGYLSNAKDIYKSVLDSYLDNIWRQLKILQFIKEKRPKTNYKVQELQCQIL
SRLQSQQKMKVLIIIRMNSDGEKHLLIKTLKKIEGLTVTVLRSIARKDFLETTGVLKGTH
SCVVVHNYSIREDFPWSSFSLVVEYNHVGHSCWAQHCQQLDIPFLAFKVAVPDTALQTDA
LLDGFGGFLLKIPIPYVFFASEGLLNTPGILRLLESNYNITLVERCCCESLKLFGSTERY
VVLTVDEQTAVVVQDLEELHYEKASDNIIMRLMALSFQYSCCWIILYSKETLNSQYHLTE
KALHHLAQIYAALVSSGLKSEELDVKVIIAPGVEETALIIRQIADHNLMMSKRDPHEWLD
KSWVEVSPSKEEMNLLDFPCINPLVAQLMLHGAPSLHWLLRAAPAELQELLPQVPGKVLK
HFCSITSLFKISSPSMTTSCQISSLQEDMNQTDLFISQRSAPIIQDHYSYDISEETVRRD
TSSPRELRERLPPCLLPAAAPHSQRSRCSGWEGSGCGPNPVQRNPFLMNTESKKITRPAL
PSPRHSQSDVFSLGLTQVSCEPKMPQTDSQRRGSQDFVNCPETKGPRNVQVSNLVFLPEG
SQPHLHWDFKKNSCRKQSSSFPPSCGAEQSTYSKRYSQKDDFSRDPPGRAWDELQDVTCR
NANAGTKETFWREPVPSWDSFCATDSNVNQRGFKGLNFCQRAGNYLRQRRLPGSSSNWGD
YETPTDLMYSQAPQPKKRRLMYEKVPGRVDGQTRLRFL
NT seq
4437 nt
NT seq
+upstream
nt +downstream
nt
atggctttgaacggaagagctatgttttcagccttcaaatattatgcaatagactattta
tatgagaacacagttaaagaaaggctttacagagatgctttattgcttcagatcccttca
tgtttaaatcaagatagaaaaattattgatgataaatataggagtccatggacaagagct
attccagttttggaaataacagataattcaatcttggatgagtggagagcaagattctgt
gtggaagatgttcttgagaaaaagacagttacaggaaggatgattaatggcacatttgag
gaaattgttccaagttccaatccaaactctccatctggggtagaggacgacaagtcggag
ccctggaagggctacgtggaagactttactcctgtcaagtgctccccagcctacccggga
gtgaaagtggagcaccaaggattacttattgatgaggaaatgattttcatgaacaaagca
atggataatcatctgccgactgtgaatactctcttgagcagactaaagctctatctggtg
aaggatccgctcttagagttcaaagaagggccctgtggaaaggataatttcatggagtgc
ttctctgttcaagaacattcagaatcttttgtgagagatttccgtatggctgaggagacc
ttttgtaaggagaaactaccatcagtttttccttttgagcttaaatccttgatgtctaca
aattccaaacaagaaattctggttctaccaccatcaaaactgaaggagttattagactca
ataccgaaaacagtggactctgtagatgaaaatgaacatttcaacagagatctttcttcc
aagcatggatttgatactgaggatataagctgcagctccacagaaaacttaacttgtgca
agactttgtgaaccagagtgcgacgagccaggagaactagaaatgccaccatcccatctg
agcttaccaaggcagcattcttcagtgaattcgttatacgcaggatttcagacatttccg
ttttctgctgcgtgtaaaattaatttgctgggcgctggagaatcagctaacacgtattgt
atgctgtggcagctggggagctgcagaaactcttgggtctcgttcttgctcacagttcca
agatttcaagaaaccagcagtcaatattcacttgcagatatgaggaacattttttctgtc
aaaggagacagccttgtgattcaccctgcaaaaacaaaggggtggagacaagcaagacta
aatccagtaatggctgaaacgttggagcatctgcaggcgtatctgtgtcataatggtctg
tctgctcaggagactaagctggagatctttctgcctacaaaagtacttgagctggagtcg
tggctagaacctaagaatagcccctcgctcctcctgccaatcagtgagaaatctgcagac
gctcaccaattacatccccagaagaggccgtcttcagaacgggaagggccacgccttcgt
ttgtctgctgaacaacgtgcctctgttaaaaattcaaacatggaagcaaatccaaagagt
ggccaagaaccagctgctcgaatgatgcagaagacggacaacggctgtgttggacttggt
aatcctgtaccgtctgttgagtcagcctcctcttcacagatcaagacatcttatgataaa
aaccgagatgatttggaccttttgagcgagtttattattctgagaagtaaacaccagact
ttcttgtcagaagctgaagtcaaaagccaagaccaaaacaatgaatttcaagataaagaa
aaatattctttgactcttcaagaagaaagtcctgttgtttctaataataaagctccagag
gaaagatgtcaggaaagagcagatgatgtcatcaggatccccgcatcagacacccagtgc
caagcatactgtctcctagaagccacagcgatccctatcttacagaagctcgtttgcctt
tgtgcctaccctgctgctaactggaagttcgccactgtcaattttgaccaaacaagattc
ttcttaaaggaacaggaaaaaataataaatgatgctattcaccaagataaaaatgatgac
agaaaaatgacgttcaagcatgctgctctcttacatctgctggtgacaattagagacgtc
cttttaacatgtggcttggatgaagcattaggatatttgtcaaatgcaaaagatatctac
aaaagtgtgttagactcctatttggataacatttggagacagctgaaaattttacagttc
attaaggaaaaaaggcctaaaaccaactataaggtccaagaattgcaatgtcagatacta
agtaggctacagagtcaacaaaaaatgaaggtactgattataataagaatgaactcagat
ggagaaaagcatttgcttattaaaacccttaagaaaatagaaggtttaacagtgactgtt
ttacgttcaattgcaagaaaagattttctggaaactactggtgttttaaaaggcacacat
tcctgtgtggtcgtgcacaattacagtatcagagaggatttcccctggagcagcttctct
ctcgtggtggagtacaaccacgtgggccactcctgctgggcccagcactgccaacagttg
gatatacctttcctggcctttaaagttgctgttccagacacggctctgcagacagatgcc
ctgctggatggatttggtgggtttctcttgaaaattccgattccatatgtattttttgca
tctgaaggacttcttaatactccaggaatactccggctgctggagtctaactataacatc
acactcgtggagagatgctgctgcgagtcactgaaactctttggaagtacagagcgttat
gtagtgctgacagtcgacgagcagacggctgtagttgtgcaggacctagaagaattacat
tatgagaaggcatcagacaatatcattatgagattaatggcattgtcgttccagtacagc
tgttgctggataatactatattccaaggaaacactaaattcacagtaccacctcacagaa
aaggcacttcatcacctcgcacagatttatgcagctctggtgtcctccggccttaaatct
gaagaactggatgtaaaggttataattgcccctggagtagaagagactgctttaataatt
cgacaaattgcagaccacaatttaatgatgtcgaagagagatcctcatgaatggttggat
aaatcctgggtggaagtttcaccttctaaggaggaaatgaacctgctagacttcccctgc
attaacccactggtggcccagctcatgctacacggagcaccttccctgcactggctcctg
agagcagctcctgctgagctccaggagctcctgccccaggttccaggcaaagtgctgaag
catttttgtagcatcacttccttgttcaagattagttctccctccatgacaacgtcttgt
cagatttcatcacttcaggaagatatgaatcaaaccgatctctttatttctcagaggtca
gctcctatcattcaagaccattattcctatgacatctcggaagagacggtgcggagagac
acaagctctcctagggagctgagagaaaggctgccgccatgcttgttgcccgctgcagca
ccgcacagccagaggagccgctgctcgggctgggagggctccggttgtggccctaaccca
gtgcagaggaaccccttcctaatgaacaccgaatcaaagaaaatcacgaggcccgccctt
cctagcccgaggcattcacagtcagatgtcttttctctgggcctaacgcaagtaagttgc
gaacccaaaatgccacaaactgattctcaaagaagaggctctcaggattttgtaaattgt
cctgaaacaaaaggacccagaaacgtgcaagtgtccaaccttgtctttttaccagagggc
tcccagccccaccttcactgggactttaagaaaaacagttgtagaaaacagagttcttca
ttccctccaagctgtggagccgaacagagcacctacagcaaacggtactctcaaaaggac
gacttctccagagatccgcccgggcgcgcgtgggatgagctgcaagacgtcacctgtaga
aacgcgaatgctgggactaaggagactttttggagagaacctgttcccagttgggattca
ttctgtgccactgattctaatgtaaaccaaagaggattcaagggcctgaatttctgccaa
agagccggaaactacctcagacagagaaggctccctggatcttcctctaactggggagat
tatgaaacaccaacagacttaatgtactcacaagcaccacaacctaagaaacgccgtcta
atgtatgagaaagtccccggaagagtggatgggcaaacccggctgaggtttctgtga
DBGET
integrated database retrieval system
