KEGG   Rattus norvegicus (rat): 686295
Entry
686295            CDS       T01003                                 
Symbol
Wdr82
Name
(RefSeq) WD repeat-containing protein 82
  KO
K14962  COMPASS component SWD2
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rno00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    686295 (Wdr82)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rno03019]
    686295 (Wdr82)
   03036 Chromosome and associated proteins [BR:rno03036]
    686295 (Wdr82)
Messenger RNA biogenesis [BR:rno03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     686295 (Wdr82)
Chromosome and associated proteins [BR:rno03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     686295 (Wdr82)
    COMPASS/SET1 complex (yeast)
     686295 (Wdr82)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WDR55 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_EML WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_WDR75_1st WD40_RFWD3 NBCH_WD40 WD_LRWD1 Beta-prop_IFT140_1st Beta-prop_EIPR1 VPS8_N Beta-prop_NUP159_NUP214 MinC_C
Other DBs
NCBI-GeneID: 686295
NCBI-ProteinID: NP_001258235
RGD: 1584269
Ensembl: ENSRNOG00000048441
UniProt: A0A096MJB3 A6I2P5
LinkDB
Position
8:115693297..115713262
AA seq 313 aa
MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD
TFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFD
KGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKA
VTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASA
CSNMAFWLPTIDD
NT seq 942 nt   +upstreamnt  +downstreamnt
atgaagctgaccgacagcgtgctgaggagcttccgcgtcgccaaggtgttccgcgagaac
tcggacaagatcaactgctttgacttcagtcccaatggggagacggtcatctccagtagc
gatgatgactccatcgtgctctatgactgccaggagggcaaaccaaagagaaccctgtac
agtaagaaatatggtgtggacctcatcagatacacccatgcagcaaacacagtcgtttac
agctctaacaaaatagacgatactattcgttacttgtccttgcatgacaataaatacatc
agatactttcctggacacagcaagagggtggtggccttgtccatgtcacctgtggatgac
actttcatttctgggtctcttgataagaccattcgactctgggatctccggtctcctaac
tgccagggcctcatgcatctacagggcaaacccgtttgttcctttgatccagaagggtta
atttttgctgcaggtgtcaactcagaaatggtcaaactttatgaccttcgttcttttgat
aagggtccatttgctacctttaagatgcagtatgatcggacttgtgagtggacaggactt
aagttcagcaacgatggcaaactgatactcatctccaccaacggcagcttcatccgcctc
attgacgcatttaagggtgtggtgatgcacacatttgggggttatgctaatagcaaagct
gttacactcgaagcttcttttactccagattcacagtttattatgattggttcagaagat
ggcaaaatccatgtgtggaatggggagagcggtataaaggtagctgtactggatgggaag
cacaccggccccatcacctgtttgcagttcaaccccaagtttatgacctttgccagcgcc
tgttccaacatggccttctggttacccaccattgatgactga

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