Rattus norvegicus (rat): 79212
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Entry
79212 CDS
T01003
Symbol
Slc6a1
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1
KO
K05034
solute carrier family 6 (neurotransmitter transporter, GABA) member 1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04082
Neuroactive ligand signaling
rno04721
Synaptic vesicle cycle
rno04727
GABAergic synapse
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
79212 (Slc6a1)
09150 Organismal Systems
09156 Nervous system
04727 GABAergic synapse
79212 (Slc6a1)
04721 Synaptic vesicle cycle
79212 (Slc6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rno02000
]
79212 (Slc6a1)
Transporters [BR:
rno02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
79212 (Slc6a1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
79212
NCBI-ProteinID:
NP_077347
RGD:
620533
Ensembl:
ENSRNOG00000006527
UniProt:
P23978
A6IBU6
Structure
PDB
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Position
4:149004447..149037840
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AA seq
599 aa
AA seq
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MATDNSKVADGQISTEVSEAPVASDKPKTLVVKVQKKAGDLPDRDTWKGRFDFLMSCVGY
AIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLAP
MFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFSNYSLV
NTTNMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWVLVYFCIWKGVGWTGKVV
YFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGL
GSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASG
PGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRR
ELFIAAVCIVSYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRF
YDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFLFSAVQMTPLTMGSYVFPKWGQGVGWLM
ALSSMVLIPGYMAYMFLTLKGSLKQRLQVMIQPSEDIVRPENGPEQPQAGSSASKEAYI
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgacaacagcaaggtggctgatgggcagatctctaccgaggtcagcgaggct
cctgtggccagtgacaagcccaaaacccttgtagtcaaggtgcagaagaaggctggagac
ctccctgaccgggacacatggaagggacgcttcgacttcctcatgtcctgtgtgggctac
gccatcggcctgggcaatgtatggaggttcccttatctctgcggaaagaacggtggtggg
gccttcctaattccatatttcctgacgctcatctttgcgggtgttcctctcttccttttg
gagtgctccctaggccagtacacctccattgggggcctgggcgtatggaagctggctccc
atgttcaagggtgtgggcctcgcggcagctgtgctgtccttctggctgaacatttattac
attgtcatcatctcctgggccatctactacctgtacaactccttcaccacgactctgccg
tggaaacagtgtgacaacccctggaacactgaccgctgcttctccaactatagcctggtc
aacaccaccaacatgaccagtgccgtggtggaattctgggagcgcaacatgcaccaaatg
acagatgggctagacaagccaggacagatccgctggccgctagccatcacactggccatt
gcctgggtgcttgtgtatttctgcatctggaagggtgttggatggactggaaaggtggtc
tacttctcagccacatacccctacatcatgctcatcatcctgttcttccgtggagtgaca
cttcctggggccaaggaggggatcctcttctacatcacgcccaacttccgaaagctgtct
gattctgaggtgtggcttgacgccgccacccagatcttcttctcctacggactgggcctg
gggtccctgattgctctgggaagctacaactctttccacaacaatgtgtacagggactcc
atcattgtttgctgcatcaactcctgcaccagcatgtttgccggcttcgtcatcttctcc
atcgtgggcttcatggctcatgtcaccaagaggtccatagccgatgtggcggcctcaggc
cctggactggcattcttggcgtaccccgaggctgtgacacagctacccatctctcccctc
tgggctatcctcttcttctccatgctgctgatgctgggcattgacagccagttctgtacc
gtggagggcttcatcactgccctggtggatgagtaccccaggcttctccgcaatcgccgt
gaactcttcattgctgccgtgtgcatcgtgtcctacctgattggcctctctaacatcacc
cagggtggcatttatgtcttcaaactgttcgattattactctgccagtggcatgagcctg
ctgttcctggttttctttgagtgtgtctccatttcctggttttatggtgtcaaccggttc
tatgacaacatccaggagatggttggctccaggccctgcatctggtggaagctgtgctgg
tcctttttcacacccatcattgtggcgggcgtgtttctcttcagtgctgtgcagatgaca
ccactcaccatgggaagctacgttttccccaagtggggccagggcgtgggctggctcatg
gctctgtcctccatggtgctcatccccgggtacatggcttacatgttcctcaccctaaag
ggctctctgaagcagcgtctccaggtcatgattcagcccagtgaagatatcgtgcgccct
gagaatggtcctgagcagccgcaggctggcagctcagccagcaaggaggcctacatctag
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