Rattus norvegicus (rat): 81709
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Entry
81709 CDS
T01003
Symbol
Msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
rno
Rattus norvegicus (rat)
Pathway
rno01524
Platinum drug resistance
rno03430
Mismatch repair
rno05200
Pathways in cancer
rno05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
81709 (Msh2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
81709 (Msh2)
09162 Cancer: specific types
05210 Colorectal cancer
81709 (Msh2)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
81709 (Msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rno03400
]
81709 (Msh2)
DNA repair and recombination proteins [BR:
rno03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
81709 (Msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_I
MutS_IV
AAA_27
Motif
Other DBs
NCBI-GeneID:
81709
NCBI-ProteinID:
NP_112320
RGD:
620786
Ensembl:
ENSRNOG00000015796
UniProt:
P54275
F7FQ51
B1WBQ7
LinkDB
All DBs
Position
6:complement(12567368..12626534)
Genome browser
AA seq
933 aa
AA seq
DB search
MAVQPKETLQLEGAAEVGFVRFFEGMPEKPSTTVRLFDRGDFYTAHGEDALLAAREVFKT
QGVIKYMGPAGAKTLQTVVLSKMNFESFVKDLLLVRHYRVEVYKNKAGNKASKENDWYLA
YKASPGNLSQFEDILFGNNDMSTSIGIMGIKLSTVDGQRQVGVGYVDSTQRKLGLCEFPD
NDQFSNLEALLIQIGPKECILPGGETAGDMGKLRQVIQRGGILITERKRIDFSTKDIYQD
LNRLLKGRKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELATFDFSQYM
KLDMAAVRALNLFQGSVEDTTGSQSLAALLNKCKTAQGQRLVSQWIKQPLMDKNRIEERL
NLVEAFVEDSELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGVNQLPNVIQA
LEKYQGRHQALLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE
LREVMDGLEKKMQSTLISAARGLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFS
TVDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLA
HLDAVVSFAHVSNAAPVPYVRPVILEKGKGRIILKASRHACVEVQDDVAFIPNDVHFEKD
KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF
ATHFHELTALASQIPTVNNLHVTALTTEETLTMLYQVKTGVCDQSFGIHVAELANFPRHV
IECAKQKALELEEFQSIGTSQGHDETQPAAKRRCLEREQGEKIILEFLSKVKQVPFTDLS
EESVSVKLKQLKAEVLAKNNSFVNEIISRVKAP
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagcctaaggagacgctgcagttggagggcgcggccgaggtgggcttcgta
cgcttctttgagggcatgccggagaagccgagcaccacggtgcgcctcttcgaccgcggc
gacttttacaccgcgcacggcgaggacgcgctgctggcggcccgcgaggtgttcaagacc
caaggcgtgatcaagtacatggggccggcaggggcaaagaccctgcagactgttgtgctg
agtaagatgaattttgagtctttcgtgaaagatcttcttctggttcgtcactatagagtt
gaagtttataagaataaagctggaaataaggcatctaaggagaacgactggtatttggca
tataaggcttctcctggcaatctttctcagtttgaagacatcctgtttggtaacaatgac
atgtccacttccattggcattatgggtattaaactgtctacggttgatggtcagagacag
gttggagttgggtatgtggattccacccagagaaagctaggattgtgtgagttccctgac
aacgatcagttctccaatctcgaggctcttctgattcagattggaccaaaggaatgcatt
ttaccaggcggagagactgctggagacatggggaaactgaggcaggttatacagagagga
gggattctgatcacagaaagaaagagaatcgacttttccacaaaagacatctaccaggat
ctcaaccggttactgaaaggcagaaaaggagagcagatgaacagcgctgtcttaccagag
atggagaatcaggttgcagtttcatcgttgtctgcagtgatcaagttcctagaactctta
tcagatgattcgaattttgggcagtttgaactggcgacttttgacttcagccagtacatg
aagttagacatggcggcagttagagccctcaaccttttccagggttctgttgaagacacc
acaggctctcagtctctggctgcattattgaataaatgcaaaactgctcaaggacaaagg
ctggttagccagtggatcaaacagccgctcatggataaaaacaggattgaagagagatta
aatttagtggaagcttttgttgaagattcagaattgaggcagagtctacaggaggattta
cttcgccgatttccagatcttaaccggcttgccaagaaatttcagagacaagcagcgaat
ttacaagattgttaccgactgtatcagggtgtgaaccagcttcccaacgtcatccaggct
ctggagaaataccaaggaagacaccaggcattgttgttggcagtttttgtgactcctctt
actgatcttcgttctgatttttcaaaatttcaagaaatgatagaaacgactttagatatg
gatcaggtggagaaccacgaattccttgtaaaaccttcatttgatcctaacctgagtgag
ctaagagaagtcatggatggtctggagaagaagatgcagtccaccttaataagtgcagcg
cggggtcttggattggaccctggcaaacagattaaattggactccagtgcacagtttggg
tattactttcgtgtaacctgcaaggaagagaaagtcctccgcaacaacaagaacttcagc
accgtggatatccagaagaatggcgttaaattcaccaacagtgaattgtcttctttaaat
gaagaatacactaagaacaaaggagagtatgaggaggcccaggatgccattgttaaagaa
atcgtcaatatttcctcaggctacgtggagccaatgcagacgctcaatgacgtgctagct
cacttagatgccgtcgttagttttgctcatgtgtcaaacgcagctcctgtcccctacgtg
cgaccggtcatcttggagaaaggaaaaggaagaattatattgaaagcctccaggcatgct
tgtgttgaagttcaagatgacgttgcatttattccaaacgatgtgcactttgaaaaagat
aaacagatgttccacatcattactggtcccaatatgggaggaaagtcaacatacatccgt
cagacgggggtgattgtgctcatggcccaaattgggtgttttgtgccgtgtgagtcagca
gaggtgtccattgtggattgcatcttggctcgagtcggggctggtgacagtcaactgaaa
ggcgtctccacattcatggctgaaatgctggaaactgcttctatcctcaggtcggcaacc
aaagattccttaataatcattgatgagctgggaagaggaacctctacatacgacggcttt
gggttagcatgggccatatcggagtacatcgcaacgaagattggtgccttttgcatgttt
gccacccattttcatgaacttaccgctttggccagtcagataccaaccgttaacaatctc
cacgtcacagcgctgactaccgaagagaccctgactatgctttaccaagtgaaaacaggt
gtctgtgatcagagtttcgggattcatgtggctgaactcgctaatttccctaggcatgtg
atagagtgcgccaagcagaaggctctggagcttgaggagtttcagagcattgggacctca
cagggacacgatgaaacccagccagctgcaaagaggcgctgcctggaaagagagcaaggt
gagaagattattctggagttcctgtccaaggtcaagcaagtgcccttcactgacttgtcg
gaggagagcgtctcagtgaagctgaagcaactgaaagctgaggtgctggcgaagaacaac
agctttgtaaatgaaatcatctcacgggtaaaggctccgtga
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